ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rpnB1 - ECOD Domain | ECOD

ECOD/Domains/e1rpnB1

e1rpnB1

UID: 000096722

PDB

Range: B:3-323
PDB: 1RPN chain B(all domains)
UniProt: Q51366 (all domains)
Gene: gmd

Molecule: GDP-mannose 4,6-dehydratase

3D Structure

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Related Domains

Browse other domains in GDP_Man_Dehyd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyGDP_Man_Dehyd(2003.1.1.72)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
NADPHNDP
drugDrugBank DB02338

Shown in the structure viewer.

Pfam Families

PF16363GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1RPN RCSB PDB: 1RPN PDBe: 1RPN UniProt: Q51366

Downloads

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Drug annotations from DrugDomain.