ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4aukA1 - ECOD Domain | ECOD

ECOD/Domains/e4aukA1

e4aukA1

UID: 000991582

PDB

Range: A:118-121,A:179-357
PDB: 4AUK chain A(all domains)
UniProt: P0ADR6 (all domains)
Gene: rlmM

Molecule: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M

3D Structure

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Related Domains

Browse other domains in FtsJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyFtsJ(2003.1.5.15)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459

+ 5 additives (Glycerin, Triethylene glycol, Tromethamine, …)

GlycerinGOL
DrugBank DB09462

Pfam Families

FtsJ-like methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4AUK RCSB PDB: 4AUK PDBe: 4AUK UniProt: P0ADR6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE

DrugBank DB02327

TromethamineTRS

DrugBank DB03754

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.