ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4aukA2 - ECOD Domain | ECOD

ECOD/Domains/e4aukA2

e4aukA2

UID: 000991583

PDB

Range: A:1-73
PDB: 4AUK chain A(all domains)
UniProt: P0ADR6 (all domains)
Gene: rlmM

Molecule: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M

3D Structure

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Related Domains

Browse other domains in RlmM_FDX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFerredoxin-like domain in ThiI(304.120)

TT-groupFerredoxin-like domain in ThiI(304.120.1)

FFamilyRlmM_FDX(304.120.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 5 additives (Glycerin, Triethylene glycol, Tromethamine, …)

GlycerinGOL
DrugBank DB09462
Triethylene glycolPGE
DrugBank DB02327
Tromethamine

Pfam Families

PF18125RlmM_FDX

RlmM ferredoxin-like domain

External Links

ECOD PDB View: 4AUK RCSB PDB: 4AUK PDBe: 4AUK UniProt: P0ADR6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.