ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3p4hA1 - ECOD Domain | ECOD

ECOD/Domains/e3p4hA1

e3p4hA1

UID: 000998899

PDB

Range: A:0-117
PDB: 3P4H chain A(all domains)
UniProt: B1L4V6 (all domains)
Gene: Kcr_0736

Molecule: ATP-dependent DNA ligase, N-terminal domain protein

3D Structure

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Related Domains

Browse other domains in LigD_N →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOncogene product-like(58)

HH-groupLigD phosphoesterase domain(58.2)

TT-groupLigD phosphoesterase domain(58.2.1)

FFamilyLigD_N(58.2.1.1)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 2 additives (Phosphate ion, DI(HYDROXYETHYL)ETHER)

Phosphate ionPO4
DrugBank DB14523
DI(HYDROXYETHYL)ETHER

Pfam Families

DNA Ligase D 3'-phosphoesterase domain

External Links

ECOD PDB View: 3P4H RCSB PDB: 3P4H PDBe: 3P4H UniProt: B1L4V6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.