F-group (family)
1.1.7.1 Orn_DAP_Arg_deC
Ligands and drugs
304
Member domains
130
with ligand contacts (≤ 4 Å)
42.8% of members
125
with DrugDomain annotations
41.1% of members
105
with a DrugBank compound
34.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 1.1.7.1 belongs to X-group 1 cradle loop barrel, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00114 | PLP | Pyridoxal phosphate | 65 |
| DB00123 | LYS | Lysine | 12 |
| DB01917 | PUT | Putrescine | 9 |
| DB03856 | DMO | L-Eflornithine | 5 |
| DB04083 | LLP | N(6)-(pyridoxal phosphate)-L-lysine | 5 |
| DB03854 | N2P | Cadaverine | 4 |
| DB04263 | GET | Geneticin | 4 |
| DB02209 | PXP | Pyridoxine phosphate | 3 |
| DB02824 | PLG | N-Pyridoxyl-Glycine-5-Monophosphate | 3 |
| DB03252 | DLY | D-Lysine | 3 |
| DB00548 | AZ1 | Azelaic acid | 2 |
| DB00125 | — | Arginine | 1 |
| DB00127 | — | Spermine | 1 |
| DB00203 | — | Sildenafil | 1 |
| DB00313 | — | — | 1 |
| DB06243 | — | — | 1 |
| DB09096 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| PLP | PYRIDOXAL-5'-PHOSPHATE | 68 |
| LYS | LYSINE | 14 |
| PUT | 1,4-DIAMINOBUTANE | 11 |
| ORX | N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE | 8 |
| PL2 | (4-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE | 8 |
| NAmetal | SODIUM ION | 7 |
| XAP | 3-AMINOOXY-1-AMINOPROPANE | 6 |
| 5DK | (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine | 4 |
| DMO | ALPHA-DIFLUOROMETHYLORNITHINE | 4 |
| LLP | (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid | 4 |
| N2P | PENTANE-1,5-DIAMINE | 4 |
| SCN | THIOCYANATE ION | 4 |
| GET | GENETICIN | 3 |
| Kmetal | POTASSIUM ION | 3 |
| A1AQO | O-{[(3R)-pyrrolidin-3-yl]methyl}hydroxylamine | 2 |
| A1AQP | O-{[(3S)-pyrrolidin-3-yl]methyl}hydroxylamine | 2 |
| A1B68 | [(4R)-4-{(E)-[(4-carbamimidamidobutyl)imino]methyl}-6-methyl-5-oxo-4,5-dihydropyridin-3-yl]methyl dihydrogen phosphate | 2 |
| AZ1 | AZELAIC ACID | 2 |
| DN9 | (2~{S})-2-[2-[2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]ethylamino]-2-oxidanylidene-ethyl]-2-oxidanyl-butanedioic acid | 2 |
| MGmetal | MAGNESIUM ION | 2 |