T-group (topology)

1.1.7 Alanine racemase-C

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Ligands and drugs

24,439

Member domains

3,177

with ligand contacts (≤ 4 Å)

13.0% of members

2,258

with DrugDomain annotations

9.2% of members

1,056

with a DrugBank compound

4.3% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 1.1.7 belongs to X-group 1 cradle loop barrel, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB03147	FAD	Flavin adenine dinucleotide	380
DB00114	PLP	Pyridoxal phosphate	163
DB03461	NAP	Nicotinamide adenine dinucleotide phosphate	91
DB16833	ADP	Adenosine disphosphate	35
DB00140	RBF	Riboflavin	23
DB03247	FMN	Flavin mononucleotide	23
DB02038	DCS	D-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-N,O-cycloserylamide	21
DB02098	A2P	Adenosine-2'-5'-Diphosphate	20
DB00123	LYS	Lysine	12
DB01917	PUT	Putrescine	12
DB03815	FOC	Fucitol	11
DB00120	PHE	Phenylalanine	10
DB00134	MET	Methionine	9
DB02377	GUN	Guanine	9
DB03566	SPD	Spermidine	9
DB03766	PPI	Propanoic acid	9
DB14128	NAD	Nadide	9
DB02536	3GR	D-glyceraldehyde	8
DB03327	IN5	{1-[(3-Hydroxy-Methyl-5-Phosphonooxy-Methyl-Pyridin-4-Ylmethyl)-Amino]-Ethyl}-Phosphonic Acid	8
DB04315	GDP	Guanosine-5'-Diphosphate	8

Most frequently bound compounds

PDB ligand	Name	Domains in contact
MGmetal	MAGNESIUM ION	1,736
FAD	FLAVIN-ADENINE DINUCLEOTIDE	419
CL	CHLORIDE ION	155
PLP	PYRIDOXAL-5'-PHOSPHATE	155
OHX	osmium (III) hexammine	145
MNmetal	MANGANESE (II) ION	116
Kmetal	POTASSIUM ION	98
NAmetal	SODIUM ION	96
NAP	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	89
PUT	1,4-DIAMINOBUTANE	52
SPD	SPERMIDINE	38
ADP	ADENOSINE-5'-DIPHOSPHATE	34
SR0	N~1~-(3-azaniumylpropyl)butane-1,4-diaminium	32
SRmetal	STRONTIUM ION	30
MET	METHIONINE	27
PHE	PHENYLALANINE	25
RBF	RIBOFLAVIN	22
DCS	D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE	21
ZNmetal	ZINC ION	21
UNX	UNKNOWN ATOM OR ION	20