F-group (family)

1.1.7.6 Ala_racemase_C

Open in classification tree →Pfam PF00842 →

Ligands and drugs

537

Member domains

160

with ligand contacts (≤ 4 Å)

29.8% of members

143

with DrugDomain annotations

26.6% of members

137

with a DrugBank compound

25.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 1.1.7.6 belongs to X-group 1 cradle loop barrel, which binds 9.4 ligand superclasses per 20 proteins, broader than 87% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB00114	PLP	Pyridoxal phosphate	70
DB02038	DCS	D-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-N,O-cycloserylamide	21
DB03766	PPI	Propanoic acid	9
DB03327	IN5	{1-[(3-Hydroxy-Methyl-5-Phosphonooxy-Methyl-Pyridin-4-Ylmethyl)-Amino]-Ethyl}-Phosphonic Acid	8
DB03097	PMH	PMP-hydroxyisoxazole, pyridoxamine-5-phosphate-hydroxyisoxazole	4
DB03252	DLY	D-Lysine	3
DB00160	ALA	Alanine	2
DB00260	4AX	Cycloserine	2
DB01993	PDD	N-(5'-Phosphopyridoxyl)-D-Alanine	2
DB02142	PMP	Pyridoxamine-5'-Phosphate	2
DB03345	BME	Mercaptoethanol	2
DB04467	PP3	N-(5'-phosphopyridoxyl)-L-alanine	2
DB09157	CO2	Carbon dioxide	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
PLP	PYRIDOXAL-5'-PHOSPHATE	81
DCS	D-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE	21
ALA	ALANINE	19
CL	CHLORIDE ION	14
PPI	PROPANOIC ACID	9
IN5	{1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID	8
NAmetal	SODIUM ION	6
MGmetal	MAGNESIUM ION	5
EPC	(1S)-1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]ETHYLPHOSPHONIC ACID	4
L7N	(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene-[(4~{R})-3-oxidanylidene-1,2-oxazolidin-4-yl]azanium	4
OJQ	[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl-(3-oxidanyl-1,2-oxazol-4-yl)azanium	4
PMH	(5-HYDROXY-4-{[(3-HYDROXYISOXAZOL-4-YL)AMINO]METHYL}-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE	4
DLY	D-LYSINE	3
4AX	(R)-4-AMINO-ISOXAZOLIDIN-3-ONE	2
BME	BETA-MERCAPTOETHANOL	2
CAmetal	CALCIUM ION	2
CO2	CARBON DIOXIDE	2
EM2	(6-ethynyl-4-methanoyl-5-oxidanyl-pyridin-3-yl)methyl dihydrogen phosphate	2
EOW	(6-but-3-ynyl-4-methyl-5-oxidanyl-pyridin-3-yl)methyl dihydrogen phosphate	2
PDD	N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE	2