ECOD
F-group (family)

10.12.1.25 PhyH

Open in classification tree →Pfam PF05721 →

Ligands and drugs

474
Member domains
285
with ligand contacts (≤ 4 Å)
60.1% of members
270
with DrugDomain annotations
57.0% of members
226
with a DrugBank compound
47.7% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 10.12.1.25 belongs to X-group 10 jelly-roll, which binds 8.5 ligand superclasses per 20 proteins, broader than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB08845AKGOxogluric acid124
DB136739CSBekanamycin18
DB00139SINSuccinic acid17
DB00172PROProline17
DB04808XXXNeamine12
DB03615RIORibostamycin6
DB00149LEULeucine2
DB069031PL(1S,3aS,5aR,8aS)-1,7,7-trimethyl-1,2,3,3a,5a,6,7,8-octahydrocyclopenta[c]pentalene-4-carboxylic acid2
DB07631D9GLauryldimethylbetaine2
DB08847HYPHydroxyproline2
DB09459TLAL-tartaric acid2
DB11091PEOHydrogen peroxide2
DB00126—Ascorbic acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
AKG2-OXOGLUTARIC ACID130
NImetalNICKEL (II) ION111
FEmetalFE (III) ION86
FE2metalFE (II) ION44
OGAN-OXALYLGLYCINE28
CLCHLORIDE ION20
9CS(1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE18
SINSUCCINIC ACID18
COmetalCOBALT (II) ION17
PROPROLINE17
XXX(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranoside12
BRBROMIDE ION9
5R6Nogalamycin RO8
4IL13-Oxofumitremorgin B6
MNmetalMANGANESE (II) ION6
RIORIBOSTAMYCIN6
58J4-Methoxydehydrocyclopeptin5
58Kcyclopeptin4
8SXpreaustinoid A14
8TCberkeleyone A4