ECOD
F-group (family)

10.12.1.52 Cupin_8

Open in classification tree →Pfam PF13621 →

Ligands and drugs

245
Member domains
122
with ligand contacts (≤ 4 Å)
49.8% of members
114
with DrugDomain annotations
46.5% of members
93
with a DrugBank compound
38.0% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 10.12.1.52 belongs to X-group 10 jelly-roll, which binds 8.5 ligand superclasses per 20 proteins, broader than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB08845AKGOxogluric acid32
DB00139SINSuccinic acid3
DB08263NDFN-(carboxycarbonyl)-D-phenylalanine3
DB11815NMMTilarginine2
DB01677FUMFumaric acid1
DB01694TARD-tartaric acid1
DB023022MRSymmetric dimethylarginine1
DB03345BMEMercaptoethanol1
DB04815CQLClioquinol1
DB11145HQYOxyquinoline1
DB12255A1ZVadadustat1
DB15642A1HMolidustat1

Most frequently bound compounds

PDB ligandNameDomains in contact
ZNmetalZINC ION43
MNmetalMANGANESE (II) ION39
AKG2-OXOGLUTARIC ACID32
OGAN-OXALYLGLYCINE26
FE2metalFE (II) ION17
NImetalNICKEL (II) ION11
FEmetalFE (III) ION7
MGmetalMAGNESIUM ION6
PD2PYRIDINE-2,4-DICARBOXYLIC ACID6
NDFN-(CARBOXYCARBONYL)-D-PHENYLALANINE3
ROQ(3~{S})-3-methyl-2-oxidanylidene-pentanedioic acid3
SINSUCCINIC ACID3
2HG(2R)-2-hydroxypentanedioic acid2
8XQ8-hydroxyquinoline-5-carboxylic acid2
COmetalCOBALT (II) ION2
I78(2~{R})-2-(carboxycarbonylamino)propanoic acid2
NMM(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid2
S2G(2S)-2-HYDROXYPENTANEDIOIC ACID2
069N,3-DIHYDROXYBENZAMIDE1
2MRN3, N4-DIMETHYLARGININE1