T-group (topology)
11.1.5 Common fold of diphtheria toxin/transcription factors/cytochrome f
Ligands and drugs
6,294
Member domains
1,556
with ligand contacts (≤ 4 Å)
24.7% of members
1,343
with DrugDomain annotations
21.3% of members
553
with a DrugBank compound
8.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 11.1.5 belongs to X-group 11 Immunoglobulin-like beta-sandwich, which binds 8.0 ligand superclasses per 20 proteins, broader than 58% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 30 |
| DB03317 | HEC | Ferroheme C | 24 |
| DB00446 | CLM | Chloramphenicol | 18 |
| DB18267 | HEM | Ferroheme | 16 |
| DB03796 | PLM | Palmitic Acid | 13 |
| DB01979 | MMA | Methyl alpha-D-mannoside | 12 |
| DB07565 | CL8 | Chloramphenicol succinate | 9 |
| DB01593 | — | — | 7 |
| DB14487 | — | — | 7 |
| DB14533 | — | — | 7 |
| DB01792 | APU | Adenylyl-(3'-5')-uridine 3'-monophosphate | 6 |
| DB02082 | GNP | Phosphoaminophosphonic acid guanylate ester | 6 |
| DB02774 | PDO | 1,3-Propanediol | 6 |
| DB07492 | BRX | Bromamphenicol | 6 |
| DB00151 | CYS | Cysteine | 5 |
| DB00155 | — | Citrulline | 5 |
| DB03843 | FOR | Formaldehyde | 4 |
| DB08621 | TH8 | Thiamphenicol | 4 |
| DB00536 | GAI | Guanidine | 3 |
| DB01920 | 145 | 1-O-[O-Nitrophenyl]-Beta-D-Galactopyranose | 3 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 557 |
| CAmetal | CALCIUM ION | 208 |
| HEC | HEME C | 58 |
| CL | CHLORIDE ION | 52 |
| NImetal | NICKEL (II) ION | 50 |
| CDmetal | CADMIUM ION | 39 |
| MGmetal | MAGNESIUM ION | 39 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 39 |
| PLM | PALMITIC ACID | 22 |
| QNN | (2~{S})-2-methyl-1-azabicyclo[2.2.2]octan-3-one | 21 |
| 9YF | (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate | 20 |
| NAmetal | SODIUM ION | 20 |
| 9XX | (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate | 19 |
| ARS | ARSENIC | 19 |
| QN8 | (2~{R})-2-methyl-1-azabicyclo[2.2.2]octan-3-one | 19 |
| CLM | CHLORAMPHENICOL | 18 |
| COmetal | COBALT (II) ION | 15 |
| KGM | heptyl alpha-D-mannopyranoside | 15 |
| CUmetal | COPPER (II) ION | 13 |
| IOD | IODIDE ION | 13 |