ECOD
F-group (family)

12.3.1.5 Lyase_8

Open in classification tree →Pfam PF02278 →

Ligands and drugs

70
Member domains
39
with ligand contacts (≤ 4 Å)
55.7% of members
34
with DrugDomain annotations
48.6% of members
23
with a DrugBank compound
32.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 12.3.1.5 belongs to X-group 12 Glycosyl hydrolase domain-like, which binds 6.5 ligand superclasses per 20 proteins, narrower than 68% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00126ASCAscorbic acid1
DB02175MLAMalonic acid1
DB0459646D4-O-{4,6-O-[(1S)-1-Carboxyethylidene]-β-D-mannopyranosyl}-D-glucopyranuronic acid1
DB0459746M[4,6-O-(1-CARBOXYETHYLIDENE)-BETA-D-MANNOSE]1
DB08438PVC(2E,4R,5S)-2,3,4,5-TETRAHYDROXY-6-(PALMITOYLOXY)HEX-2-ENOIC ACID1

Most frequently bound compounds

PDB ligandNameDomains in contact
CAmetalCALCIUM ION9
NAmetalSODIUM ION6
46D(4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID)1
46M(4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID1
ASCASCORBIC ACID1
CEG4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose1
HGmetalMERCURY (II) ION1
MANalpha-D-mannopyranose1
MGmetalMAGNESIUM ION1
MLAMALONIC ACID1
MRD(4R)-2-METHYLPENTANE-2,4-DIOL1
NAG2-acetamido-2-deoxy-beta-D-glucopyranose1
PVC(2E,4R,5S)-2,3,4,5-TETRAHYDROXY-6-(PALMITOYLOXY)HEX-2-ENOIC ACID1
SIESULFAMIC ACID 1-DECYL-2-(4-SULFAMOYLOXYPHENYL)-1H-INDOL-6-YL ESTER1
XLSD-xylose1