F-group (family)
129.1.1.3 UDPG_MGDP_dh
Ligands and drugs
352
Member domains
170
with ligand contacts (≤ 4 Å)
48.3% of members
170
with DrugDomain annotations
48.3% of members
160
with a DrugBank compound
45.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 129.1.1.3 belongs to X-group 129 6-phosphogluconate dehydrogenase C-terminal domain-like, which binds 8.5 ligand superclasses per 20 proteins, broader than 68% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01861 | UPG | Uridine diphosphate glucose | 63 |
| DB14128 | NAD | Nadide | 51 |
| DB01713 | UDX | UDP-alpha-D-xylose | 37 |
| DB00157 | NAI | NADH | 31 |
| DB03041 | UGA | UDP-alpha-D-glucuronic acid | 26 |
| DB04023 | GDX | GDP-alpha-D-mannuronic acid | 12 |
| DB04349 | PGO | (S)-propane-1,2-diol | 7 |
| DB02078 | PG5 | Triglyme | 3 |
| DB01643 | TMP | Thymidine monophosphate | 2 |
| DB03685 | U5P | Uridine monophosphate | 2 |
| DB04267 | PDC | Dipicolinic acid | 2 |
| DB16833 | ADP | Adenosine disphosphate | 2 |
| DB09130 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| UPG | URIDINE-5'-DIPHOSPHATE-GLUCOSE | 59 |
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 50 |
| UDX | URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE | 37 |
| UGA | URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID | 26 |
| NAI | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | 19 |
| GDX | GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER | 12 |
| CL | CHLORIDE ION | 10 |
| A1BCU | (2R,3R,4R)-3,4-dihydroxy-5-oxooxan-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name) | 6 |
| PGO | S-1,2-PROPANEDIOL | 6 |
| POP | PYROPHOSPHATE 2- | 5 |
| PG5 | 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE | 3 |
| NAmetal | SODIUM ION | 2 |
| PDC | PYRIDINE-2,6-DICARBOXYLIC ACID | 2 |
| SAJ | (2S,3S,4R,5S,6R)-5-acetamido-6-[[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,4-bis(oxidanyl)oxane-2-carboxylic acid | 2 |
| TMP | THYMIDINE-5'-PHOSPHATE | 2 |
| U5P | URIDINE-5'-MONOPHOSPHATE | 2 |