F-group (family)

2002.1.1.1 RuBisCO_large

Open in classification tree →Pfam PF00016 →

Ligands and drugs

1,639

Member domains

669

with ligand contacts (≤ 4 Å)

40.8% of members

525

with DrugDomain annotations

32.0% of members

127

with a DrugBank compound

7.7% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2002.1.1.1 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB04510	3PG	3-phospho-D-glyceric acid	10
DB02076	6PG	6-phospho-D-gluconic acid	8
DB02338	NDP	NADPH	2
DB03843	FOR	Formaldehyde	2
DB06881	1AE	(1Z)-2-HYDROXY-3-OXOHEX-1-EN-1-YL DIHYDROGEN PHOSPHATE	2
DB00174	ASN	Asparagine	1
DB09140	OXY	Oxygen	1
DB09157	CO2	Carbon dioxide	1
DB16829	A8S	Abscisic Acid	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
MGmetal	MAGNESIUM ION	540
CAP	2-CARBOXYARABINITOL-1,5-DIPHOSPHATE	496
RUB	RIBULOSE-1,5-DIPHOSPHATE	30
CAmetal	CALCIUM ION	23
CL	CHLORIDE ION	12
3PG	3-PHOSPHOGLYCERIC ACID	10
6PG	6-PHOSPHOGLUCONIC ACID	8
MNmetal	MANGANESE (II) ION	8
XBP	XYLULOSE-1,5-BISPHOSPHATE	8
XDP	D-XYLULOSE-2,2-DIOL-1,5-BISPHOSPHATE	8
1AE	(1Z)-2-HYDROXY-3-OXOHEX-1-EN-1-YL DIHYDROGEN PHOSPHATE	2
FOR	FORMYL GROUP	2
NDP	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	2
A8S	(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid	1
ASN	ASPARAGINE	1
B3P	2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	1
CO2	CARBON DIOXIDE	1
OXY	OXYGEN MOLECULE	1