ECOD
F-group (family)

2002.1.1.120 Radical_SAM

Open in classification tree →Pfam PF04055 →

Ligands and drugs

3,220
Member domains
130
with ligand contacts (≤ 4 Å)
4.0% of members
104
with DrugDomain annotations
3.2% of members
93
with a DrugBank compound
2.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2002.1.1.120 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00118SAMAdemetionine26
DB01752SAHS-adenosyl-L-homocysteine26
DB00134METMethionine21
DB00151CYSCysteine6
DB11588CMOCarbon monoxide6
DB04005UTPUridine 5'-triphosphate5
DB00119PYRPyruvic acid3
DB02431CTPCytidine-5'-Triphosphate3
DB02184DTVD-1,4-dithiothreitol2
DB02676B3P2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol2
DB04447DTT1,4-Dithiothreitol2
DB02282MTA5'-S-methyl-5'-thioadenosine1
DB02345SECSelenocysteine1
DB02846PRSL-thioproline1
DB04237TAMTris(Hydroxyethyl)Aminomethane1

Most frequently bound compounds

PDB ligandNameDomains in contact
SF4IRON/SULFUR CLUSTER112
CLCHLORIDE ION37
SAHS-ADENOSYL-L-HOMOCYSTEINE36
SAMS-ADENOSYLMETHIONINE36
CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE23
METMETHIONINE23
5AD5'-DEOXYADENOSINE14
CTPCYTIDINE-5'-TRIPHOSPHATE11
H2SHYDROSULFURIC ACID11
FESFE2/S2 (INORGANIC) CLUSTER8
CMOCARBON MONOXIDE6
CYNCYANIDE ION6
CYSCYSTEINE6
1N7CHAPSO5
UTPURIDINE 5'-TRIPHOSPHATE5
5X8S-adenosyl-L-cysteine4
7C55'-O-(2-amino-4-oxo-1,4-dihydropteridine-6-carbonyl)adenosine4
FE2metalFE (II) ION4
MGmetalMAGNESIUM ION4
41K(2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid3