F-group (family)

2002.1.1.25 HMGL-like

Open in classification tree →Pfam PF00682 →

Ligands and drugs

655

Member domains

218

with ligand contacts (≤ 4 Å)

33.3% of members

193

with DrugDomain annotations

29.5% of members

119

with a DrugBank compound

18.2% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2002.1.1.25 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB07497	BTI	5-(hexahydro-2-oxo-1H-thieno[3,4-D]imidazol-6-yl)pentanal	38
DB00119	PYR	Pyruvic acid	30
DB00121	BTN	Biotin	7
DB04074	KIV	alpha-Ketoisovalerate	5
DB17135	BPV	Bromopyruvate	5
DB02951	3PY	3-Hydroxypyruvic Acid	4
DB03940	OXM	Oxamic Acid	4
DB00123	LYS	Lysine	3
DB01992	COA	Coenzyme A	3
DB02637	OAA	Oxaloacetate Ion	3
DB08845	AKG	Oxogluric acid	3
DB02238	KMT	4-methylthio-2-oxobutanoic acid	2
DB03229	COI	alpha-Ketoisocaproic acid	2
DB04594	3HG	3-hydroxyglutaric acid	2
DB03169	HMG	(S)-Hmg-Coa	1
DB03843	FOR	Formaldehyde	1
DB04553	2KT	2-Oxobutanoic Acid	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
MNmetal	MANGANESE (II) ION	93
MGmetal	MAGNESIUM ION	73
ZNmetal	ZINC ION	62
BTI	5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL	48
PYR	PYRUVIC ACID	41
2BA	(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide	18
BTN	BIOTIN	10
COmetal	COBALT (II) ION	10
NAmetal	SODIUM ION	9
BPV	Bromopyruvate	5
CL	CHLORIDE ION	5
KIV	3-METHYL-2-OXOBUTANOIC ACID	5
3PY	3-HYDROXYPYRUVIC ACID	4
BYT	Biocytin	4
CAmetal	CALCIUM ION	4
IOD	IODIDE ION	4
OXM	OXAMIC ACID	4
AKG	2-OXOGLUTARIC ACID	3
COA	COENZYME A	3
LYS	LYSINE	3