ECOD
F-group (family)

2002.1.1.29 DHDPS

Open in classification tree →Pfam PF00701 →

Ligands and drugs

1,733
Member domains
871
with ligand contacts (≤ 4 Å)
50.3% of members
860
with DrugDomain annotations
49.6% of members
716
with a DrugBank compound
41.3% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2002.1.1.29 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00123LYSLysine140
DB00119PYRPyruvic acid58
DB00117HISHistidine12
DB029513PY3-Hydroxypyruvic Acid12
DB03508ME2Diethylene glycol ethyl methyl ether11
DB045532KT2-Oxobutanoic Acid10
DB04447DTT1,4-Dithiothreitol9
DB02807RSH3-deoxy-D-lyxo-hexonic acid8
DB03303SSH3-deoxy-D-arabino-hexonic acid8
DB11797SI3Aceneuramic acid7
DB12536MN9N-acetylmannosamine5
DB025363GRD-glyceraldehyde4
DB03489KDG2-Keto-3-Deoxygluconate4
DB03904UREUrea4
DB04349PGO(S)-propane-1,2-diol4
DB08845AKGOxogluric acid4
DB16873LAIL-Arabinose4
DB02249ETX2-Ethoxyethanol2
DB03252DLYD-Lysine2
DB03345BMEMercaptoethanol2

Most frequently bound compounds

PDB ligandNameDomains in contact
MGmetalMAGNESIUM ION202
LYSLYSINE144
CLCHLORIDE ION107
3VN(2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid72
PYRPYRUVIC ACID66
KmetalPOTASSIUM ION57
NAmetalSODIUM ION46
3PY3-HYDROXYPYRUVIC ACID12
HISHISTIDINE12
ME21-ETHOXY-2-(2-METHOXYETHOXY)ETHANE12
2KT2-KETOBUTYRIC ACID10
DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE9
BRBROMIDE ION8
OOG2-OXOADIPIC ACID8
RSH3-DEOXY-D-LYXO-HEXONIC ACID8
SSH3-DEOXY-D-ARABINO-HEXONIC ACID8
CAmetalCALCIUM ION7
SI35-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid7
E8U(4R)-4-oxidanyl-2-oxidanylidene-heptanedioic acid6
GXVL-glyceraldehyde6