F-group (family)
2002.1.1.4 Alpha-amylase
Ligands and drugs
1,628
Member domains
768
with ligand contacts (≤ 4 Å)
47.2% of members
617
with DrugDomain annotations
37.9% of members
330
with a DrugBank compound
20.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2002.1.1.4 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02379 | BGC | Beta-D-Glucose | 37 |
| DB00141 | NAG | N-Acetylglucosamine | 22 |
| DB02120 | ACI | 6-Amino-4-Hydroxymethyl-Cyclohex-4-Ene-1,2,3-Triol | 19 |
| DB03092 | HMC | 5-Hydroxymethyl-Chonduritol | 10 |
| DB03345 | BME | Mercaptoethanol | 8 |
| DB03206 | NOJ | Duvoglustat | 7 |
| DB04453 | ARE | 4-O-(4,6-Dideoxy-4-{[4-[(4-O-Hexopyranosylhexopyranosyl)Oxy]-5,6-Dihydroxy-3-(Hydroxymethyl)Cyclohex-2-En-1-Yl]Amino}Hexopyranosyl)Hexopyranose | 6 |
| DB03088 | PCA | Pidolic acid | 5 |
| DB01694 | TAR | D-tartaric acid | 4 |
| DB01789 | ADH | 1-Amino-2,3-Dihydroxy-5-Hydroxymethyl Cyclohex-5-Ene | 4 |
| DB01816 | CTS | Castanospermine | 2 |
| DB01914 | GLO | D-glucose | 2 |
| DB02218 | — | N-[4-hydroxymethyl-cyclohexan-6-yl-1,2,3-triol]-4,6-dideoxy-4-aminoglucopyranoside | 2 |
| DB02376 | GOX | D-gluconhydroximo-1,5-lactam | 2 |
| DB02561 | BDF | Beta-D-Fructopyranose | 2 |
| DB03439 | AGL | 4,6-dideoxy-4-amino-alpha-D-glucose | 2 |
| DB04417 | NPO | P-Nitrophenol | 2 |
| DB04439 | ACG | Modified Acarbose Pentasaccharide | 2 |
| DB12529 | NO2 | Nitrite | 2 |
| DB00145 | GLY | Glycine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 598 |
| MGmetal | MAGNESIUM ION | 138 |
| CL | CHLORIDE ION | 108 |
| GLC | alpha-D-glucopyranose | 66 |
| NAmetal | SODIUM ION | 53 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 37 |
| BGC | beta-D-glucopyranose | 35 |
| MNmetal | MANGANESE (II) ION | 12 |
| PBW | (1~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol | 10 |
| BME | BETA-MERCAPTOETHANOL | 9 |
| NOJ | 1-DEOXYNOJIRIMYCIN | 9 |
| VDM | (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL | 8 |
| ARE | ACARBOSE DERIVED PENTASACCHARIDE | 6 |
| HMC | 5-HYDROXYMETHYL-CHONDURITOL | 6 |
| ACI | 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL | 4 |
| CDmetal | CADMIUM ION | 4 |
| Kmetal | POTASSIUM ION | 4 |
| MB3 | 1-methylpyrrolidin-2-one | 4 |
| OC9 | OCTAN-1-OL | 4 |
| P6G | HEXAETHYLENE GLYCOL | 4 |