ECOD
F-group (family)

2002.1.1.53 Ala_racemase_N

Open in classification tree →Pfam PF01168 →

Ligands and drugs

702
Member domains
229
with ligand contacts (≤ 4 Å)
32.6% of members
210
with DrugDomain annotations
29.9% of members
195
with a DrugBank compound
27.8% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2002.1.1.53 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00114PLPPyridoxal phosphate109
DB02038DCSD-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-N,O-cycloserylamide21
DB03327IN5{1-[(3-Hydroxy-Methyl-5-Phosphonooxy-Methyl-Pyridin-4-Ylmethyl)-Amino]-Ethyl}-Phosphonic Acid7
DB03766PPIPropanoic acid6
DB03097PMHPMP-hydroxyisoxazole, pyridoxamine-5-phosphate-hydroxyisoxazole4
DB03252DLYD-Lysine3
DB00160ALAAlanine2
DB002604AXCycloserine2
DB01993PDDN-(5'-Phosphopyridoxyl)-D-Alanine2
DB02142PMPPyridoxamine-5'-Phosphate2
DB03345BMEMercaptoethanol2
DB03640BH2Beta-Hydroxyaspartic Acid2
DB037002TLD-Threonine2
DB04467PP3N-(5'-phosphopyridoxyl)-L-alanine2
DB00172—Proline1
DB02209PXPPyridoxine phosphate1
DB03793BEZBenzoic acid1
DB03929DSND-Serine1
DB09157CO2Carbon dioxide1

Most frequently bound compounds

PDB ligandNameDomains in contact
PLPPYRIDOXAL-5'-PHOSPHATE124
CLCHLORIDE ION65
DCSD-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-N,O-CYCLOSERYLAMIDE21
MGmetalMAGNESIUM ION14
NAmetalSODIUM ION14
ALAALANINE13
IN5{1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID7
PPIPROPANOIC ACID6
EPC(1S)-1-[((1E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLENE)AMINO]ETHYLPHOSPHONIC ACID4
PMH(5-HYDROXY-4-{[(3-HYDROXYISOXAZOL-4-YL)AMINO]METHYL}-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE4
DLYD-LYSINE3
L7N(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene-[(4~{R})-3-oxidanylidene-1,2-oxazolidin-4-yl]azanium3
OJQ[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methyl-(3-oxidanyl-1,2-oxazol-4-yl)azanium3
2KZ2-amino maleic acid2
2TLD-allothreonine2
4AX(R)-4-AMINO-ISOXAZOLIDIN-3-ONE2
999(3S)-3-hydroxy-D-aspartic acid2
BH2(3R)-3-hydroxy-L-aspartic acid2
BMEBETA-MERCAPTOETHANOL2
CO2CARBON DIOXIDE2