ECOD
F-group (family)

2002.1.1.60 AP_endonuc_2

Open in classification tree →Pfam PF01261 →

Ligands and drugs

1,389
Member domains
693
with ligand contacts (≤ 4 Å)
49.9% of members
580
with DrugDomain annotations
41.8% of members
298
with a DrugBank compound
21.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2002.1.1.60 belongs to X-group 2002 TIM beta/alpha-barrel, which binds 8.7 ligand superclasses per 20 proteins, broader than 71% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB15087PSJPsicose34
DB09419XLSXylose22
DB02961RNSRhamnose20
DB01638SORSorbitol16
DB04936TAGTagatose12
DB14522OHHydroxide ion9
DB01914GLOD-glucose7
DB020421PG2-(2-{2-[2-(2-Methoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol6
DB01881MQD2-Methylpentane-1,2,4-Triol2
DB02172DIG2,5-Dideoxy-2,5-Imino-D-Glucitol2
DB02379BGCBeta-D-Glucose2
DB024383MF3-O-Methylfructose in Linear Form2
DB03206NOJDuvoglustat2
DB03389XYSalpha-D-Xylopyranose2
DB13180GCOGluconic Acid2
DB00126ASCAscorbic acid1
DB00172PROProline1
DB02418BU9(R,R)-2,3-Butanediol1
DB02561BDFBeta-D-Fructopyranose1
DB03246ARBBeta-L-Arabinose1

Most frequently bound compounds

PDB ligandNameDomains in contact
MNmetalMANGANESE (II) ION308
MGmetalMAGNESIUM ION246
ZNmetalZINC ION73
COmetalCOBALT (II) ION65
PSJD-psicose46
FUDD-fructose45
GLCalpha-D-glucopyranose30
NAmetalSODIUM ION30
CLCHLORIDE ION26
RNSL-RHAMNOSE20
XLSD-xylose20
NImetalNICKEL (II) ION16
SORsorbitol16
CAmetalCALCIUM ION14
GLOD-glucose14
FEmetalFE (III) ION10
TAGD-tagatose10
CDmetalCADMIUM ION9
OHHYDROXIDE ION9
AOSD-ALLOSE8