ECOD
F-group (family)

2003.1.1.12 DapB_N

Open in classification tree →Pfam PF01113 →

Ligands and drugs

781
Member domains
105
with ligand contacts (≤ 4 Å)
13.4% of members
116
with DrugDomain annotations
14.9% of members
106
with a DrugBank compound
13.6% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2003.1.1.12 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB14128NADNadide49
DB04267PDCDipicolinic acid22
DB03461NAPNicotinamide adenine dinucleotide phosphate21
DB00157NAINADH14
DB02338NDPNADPH4
DB02045AMLAmylamine2
DB02371NES2-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Ethanesulfonic Acid2
DB03793BEZBenzoic acid2
DB03363A3D3-Acetylpyridine Adenine Dinucleotide1
DB054836PCPicolinic acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE49
NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE26
PDCPYRIDINE-2,6-DICARBOXYLIC ACID18
7FN2,5 Furan Dicarboxylic Acid10
NAmetalSODIUM ION10
CLCHLORIDE ION4
MGmetalMAGNESIUM ION4
NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE4
UNXUNKNOWN ATOM OR ION3
AMLAMYLAMINE2
BEZBENZOIC ACID2
CAmetalCALCIUM ION2
NES2-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-ETHANESULFONIC ACID2
6PCPYRIDINE-2-CARBOXYLIC ACID1
A3D3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE1
HAICYCLOHEXYLAMMONIUM ION1
NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE1
NHDNICOTINAMIDE PURIN-6-OL-DINUCLEOTIDE1