ECOD
F-group (family)

2003.1.1.141 Polysacc_synt_2, GDP_Man_Dehyd

Open in classification tree →Pfam PF02719,PF16363 →

Ligands and drugs

94
Member domains
26
with ligand contacts (≤ 4 Å)
27.7% of members
26
with DrugDomain annotations
27.7% of members
24
with a DrugBank compound
25.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2003.1.1.141 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB14128NADNadide23
DB04315GDPGuanosine-5'-Diphosphate5
DB03161TDXThymidine-5'-diphospho-beta-D-xylose4
DB04555CDPCytidine-5'-Diphosphate4
DB00536GAIGuanidine2
DB03103TYDThymidine-5'- Diphosphate2
DB03397UD1Uridine-Diphosphate-N-Acetylglucosamine2
DB03751DAU2'deoxy-Thymidine-5'-Diphospho-Alpha-D-Glucose2
DB03435UDPUridine-5'-Diphosphate1
DB03461NAPNicotinamide adenine dinucleotide phosphate1

Most frequently bound compounds

PDB ligandNameDomains in contact
NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE23
GDPGUANOSINE-5'-DIPHOSPHATE5
CDPCYTIDINE-5'-DIPHOSPHATE4
TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE4
CLCHLORIDE ION3
A2R[(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4R,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE2
DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE2
GAIGUANIDINE2
GDDGUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE2
NAmetalSODIUM ION2
TYDTHYMIDINE-5'-DIPHOSPHATE2
UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE2
MGmetalMAGNESIUM ION1
NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE1
UDPURIDINE-5'-DIPHOSPHATE1