F-group (family)
2003.1.1.72 GDP_Man_Dehyd
Ligands and drugs
342
Member domains
102
with ligand contacts (≤ 4 Å)
29.8% of members
97
with DrugDomain annotations
28.4% of members
96
with a DrugBank compound
28.1% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.1.72 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB14128 | NAD | Nadide | 40 |
| DB03461 | NAP | Nicotinamide adenine dinucleotide phosphate | 32 |
| DB02338 | NDP | NADPH | 21 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 21 |
| DB03103 | TYD | Thymidine-5'- Diphosphate | 8 |
| DB02547 | GDR | Guanosine-5'-Diphosphate-Rhamnose | 6 |
| DB01861 | UPG | Uridine diphosphate glucose | 5 |
| DB18689 | GFB | GDP-L-fucose | 4 |
| DB03397 | UD1 | Uridine-Diphosphate-N-Acetylglucosamine | 3 |
| DB03751 | DAU | 2'deoxy-Thymidine-5'-Diphospho-Alpha-D-Glucose | 3 |
| DB03435 | UDP | Uridine-5'-Diphosphate | 2 |
| DB03709 | BCN | Bicine | 2 |
| DB03069 | CXY | Cytidine-5'-diphospho-beta-D-xylose | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 46 |
| NAP | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 32 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 21 |
| NDP | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 21 |
| GDD | GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE | 12 |
| TYD | THYMIDINE-5'-DIPHOSPHATE | 8 |
| UDP | URIDINE-5'-DIPHOSPHATE | 8 |
| GDR | GUANOSINE-5'-DIPHOSPHATE-RHAMNOSE | 7 |
| 6CK | [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4R,5S,6R)-3,4,5-trihydroxy-6-(trifluoromethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name) | 4 |
| CL | CHLORIDE ION | 4 |
| F7E | [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},6~{R})-6-methyl-3,4-bis(oxidanyl)-5-oxidanylidene-oxan-2-yl] hydrogen phosphate | 4 |
| G4F | [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{S},6~{R})-5-fluoranyl-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate | 4 |
| GFB | GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE | 4 |
| NImetal | NICKEL (II) ION | 4 |
| DAU | 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE | 3 |
| MGmetal | MAGNESIUM ION | 3 |
| UD1 | URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE | 3 |
| UPG | URIDINE-5'-DIPHOSPHATE-GLUCOSE | 3 |
| APR | ADENOSINE-5-DIPHOSPHORIBOSE | 2 |
| BCN | BICINE | 2 |