F-group (family)
2003.1.5.1 DNA_methylase
Ligands and drugs
484
Member domains
257
with ligand contacts (≤ 4 Å)
53.1% of members
148
with DrugDomain annotations
30.6% of members
144
with a DrugBank compound
29.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.5.1 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01752 | SAH | S-adenosyl-L-homocysteine | 117 |
| DB00118 | SAM | Ademetionine | 6 |
| DB00171 | ATP | ATP | 3 |
| DB01262 | — | — | 3 |
| DB01910 | SFG | Sinefungin | 3 |
| DB00721 | — | — | 2 |
| DB07919 | HRM | Harmine | 2 |
| DB00738 | — | Pentamidine | 1 |
| DB00928 | — | Azacitidine | 1 |
| DB01035 | — | — | 1 |
| DB01099 | — | Flucytosine | 1 |
| DB02594 | DCZ | Doxecitine | 1 |
| DB03345 | BME | Mercaptoethanol | 1 |
| DB05668 | — | — | 1 |
| DB12116 | — | Epigallocatechin gallate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| SAH | S-ADENOSYL-L-HOMOCYSTEINE | 217 |
| ZNmetal | ZINC ION | 22 |
| MGmetal | MAGNESIUM ION | 10 |
| SAM | S-ADENOSYLMETHIONINE | 9 |
| CAmetal | CALCIUM ION | 6 |
| CL | CHLORIDE ION | 4 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 3 |
| SFG | SINEFUNGIN | 3 |
| HRM | 7-METHOXY-1-METHYL-9H-BETA-CARBOLINE | 2 |
| SAO | 5'-S-[(3S)-3-azaniumyl-3-carboxypropyl]-5'-thioadenosine | 2 |
| UNX | UNKNOWN ATOM OR ION | 2 |
| 96I | (2R)-2-{[6-(4-aminopiperidin-1-yl)-3,5-dicyano-4-ethylpyridin-2-yl]amino}-2-phenylacetamide | 1 |
| A1IUL | 4-ethyl-~{N}-[[1-[[(2~{R})-1-(1~{H}-indol-3-yl)-4-[[2-(methylamino)-2-oxidanylidene-ethyl]amino]-4-oxidanylidene-butan-2-yl]carbamoyl]cyclopropyl]methyl]benzamide | 1 |
| BME | BETA-MERCAPTOETHANOL | 1 |
| C79 | (2R)-2-{[6-(4-aminopiperidin-1-yl)-3,5-dicyano-4-ethylpyridin-2-yl]sulfanyl}-2-[4-(trifluoromethyl)phenyl]acetamide | 1 |
| DCZ | 2'-DEOXYCYTIDINE | 1 |
| GEK | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio]-2-ammoniobutanoate | 1 |
| I67 | N-{[4-({[3,5-dicyano-4-ethyl-6-(4-methyl-1,4-diazepan-1-yl)pyridin-2-yl]sulfanyl}methyl)phenyl]methyl}glycinamide | 1 |
| IO5 | (2S)-2-({3,5-dicyano-4-ethyl-6-[4-(2-hydroxyethyl)-1,4-diazepan-1-yl]pyridin-2-yl}sulfanyl)-2-phenylacetamide | 1 |
| IOD | IODIDE ION | 1 |