T-group (topology)
2003.1.6 Tubulin nucleotide-binding domain-like
Ligands and drugs
13,392
Member domains
11,120
with ligand contacts (≤ 4 Å)
83.0% of members
7,839
with DrugDomain annotations
58.5% of members
7,823
with a DrugBank compound
58.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.6 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04137 | GTP | Guanosine-5'-Triphosphate | 4,176 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 3,543 |
| DB03532 | G2P | Phosphomethylphosphonic acid guanylate ester | 178 |
| DB01229 | TA1 | Paclitaxel | 158 |
| DB01864 | GSP | 5'-Guanosine-Diphosphate-Monothiophosphate | 54 |
| DB01394 | LOC | Colchicine | 45 |
| DB07574 | CN2 | 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE | 18 |
| DB03010 | — | Patupilone | 12 |
| DB01873 | — | Epothilone D | 11 |
| DB05992 | PN6 | Plinabulin | 11 |
| DB00570 | VLB | Vinblastine | 10 |
| DB00643 | V95 | Mebendazole | 8 |
| DB01179 | POD | Podofilox | 6 |
| DB08313 | NW6 | Nocodazole | 6 |
| DB12695 | — | — | 6 |
| DB06137 | DN0 | Tirbanibulin | 5 |
| DB03083 | IC1 | IC261 | 4 |
| DB05585 | 88U | Verubulin | 4 |
| DB08871 | 6K9 | Eribulin | 4 |
| DB11638 | — | — | 4 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 5,717 |
| MGmetal | MAGNESIUM ION | 5,230 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 5,127 |
| CAmetal | CALCIUM ION | 763 |
| TA1 | TAXOL | 278 |
| G2P | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 195 |
| LOC | N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide | 56 |
| GSP | 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE | 49 |
| CL | CHLORIDE ION | 48 |
| YGY | Cryptophycin 52 | 25 |
| Kmetal | POTASSIUM ION | 22 |
| YNP | Cryptophycin 1 | 17 |
| IBL | Azo-Combretastatin A4 (cis) | 16 |
| CN2 | 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE | 14 |
| NAmetal | SODIUM ION | 12 |
| EP | EPOTHILONE A | 11 |
| PN6 | (3Z,6Z)-3-benzylidene-6-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]piperazine-2,5-dione | 11 |
| 8WB | 2-methoxy-5-(2,3,4-trimethoxyphenyl)cyclohepta-2,4,6-trien-1-one | 8 |
| VYT | Azo-Combretastatin A4 (trans) | 8 |
| ZNmetal | ZINC ION | 8 |