T-group (topology)
2003.1.7 NagB/RpiA/CoA transferase-like
Ligands and drugs
3,051
Member domains
558
with ligand contacts (≤ 4 Å)
18.3% of members
531
with DrugDomain annotations
17.4% of members
380
with a DrugBank compound
12.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2003.1.7 belongs to X-group 2003 Rossmann-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 78% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01992 | COA | Coenzyme A | 76 |
| DB00131 | AMP | Adenosine phosphate | 19 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 15 |
| DB03951 | 16G | N-acetyl-D-glucosamine-6-phosphate | 14 |
| DB02445 | AGP | 2-Deoxy-2-Amino Glucitol-6-Phosphate | 8 |
| DB02900 | M6P | alpha-D-mannose 6-phosphate | 8 |
| DB04493 | F6R | Fructose-6-phosphate | 8 |
| DB02731 | EMT | Ethylmercurithiosalicylic acid | 6 |
| DB04122 | BG6 | beta-D-glucose 6-phosphate | 6 |
| DB16833 | ADP | Adenosine disphosphate | 6 |
| DB01756 | DER | 4-phospho-L-threonic acid | 5 |
| DB03566 | SPD | Spermidine | 4 |
| DB04127 | ABF | beta-D-arabinofuranose 5-phosphate | 4 |
| DB04326 | 13P | Dihydroxyacetone phosphate | 3 |
| DB04349 | PGO | (S)-propane-1,2-diol | 3 |
| DB02053 | R5P | Ribose-5-phosphate | 2 |
| DB02076 | 6PG | 6-phospho-D-gluconic acid | 2 |
| DB02210 | HEZ | Hexane-1,6-Diol | 2 |
| DB02657 | GLP | Glucosamine 6-Phosphate | 2 |
| DB02726 | PGA | 2-Phosphoglycolic Acid | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CL | CHLORIDE ION | 127 |
| COA | COENZYME A | 74 |
| Kmetal | POTASSIUM ION | 48 |
| MGmetal | MAGNESIUM ION | 31 |
| RI2 | 1,5-di-O-phosphono-alpha-D-ribofuranose | 28 |
| AMP | ADENOSINE MONOPHOSPHATE | 19 |
| RUB | RIBULOSE-1,5-DIPHOSPHATE | 18 |
| C7B | 2-(4-chloranylphenoxy)-~{N}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide | 17 |
| 0T1 | [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl][(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate | 14 |
| 16G | 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose | 14 |
| CAmetal | CALCIUM ION | 14 |
| ZNmetal | ZINC ION | 12 |
| 5RP | RIBULOSE-5-PHOSPHATE | 10 |
| AGP | 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE | 8 |
| F6R | FRUCTOSE -6-PHOSPHATE | 8 |
| M6P | 6-O-phosphono-alpha-D-mannopyranose | 8 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 6 |
| BG6 | 6-O-phosphono-beta-D-glucopyranose | 6 |
| HGmetal | MERCURY (II) ION | 6 |
| HSX | 5-O-phosphono-alpha-D-ribofuranose | 6 |