F-group (family)
2004.1.1.79 Thymidylate_kin
Ligands and drugs
899
Member domains
226
with ligand contacts (≤ 4 Å)
25.1% of members
225
with DrugDomain annotations
25.0% of members
157
with a DrugBank compound
17.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2004.1.1.79 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01643 | TMP | Thymidine monophosphate | 56 |
| DB16833 | ADP | Adenosine disphosphate | 45 |
| DB03666 | ATM | Zidovudine monophosphate | 17 |
| DB03103 | TYD | Thymidine-5'- Diphosphate | 15 |
| DB03280 | T5A | p1-(5'-adenosyl)p5-(5'-thymidyl)pentaphosphate | 14 |
| DB00171 | ATP | ATP | 6 |
| DB04485 | THM | Thymidine | 5 |
| DB03150 | 2DT | 2',3'-Dideoxythymidine-5'-Monophosphate | 4 |
| DB03909 | ACP | Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate | 3 |
| DB04457 | DGP | 2'-Deoxyguanosine-5'-Monophosphate | 3 |
| DB03195 | FDM | 3'-Fluoro-3'-deoxythymidine 5'-monophosphate | 2 |
| DB03403 | C5P | Cytidine-5'-Monophosphate | 2 |
| DB03845 | Z5A | P1-(5'-Adenosyl)P5-(5'-(3'azido-3'-Deoxythymidyl))Pentaphosphate | 2 |
| DB04237 | TAM | Tris(Hydroxyethyl)Aminomethane | 2 |
| DB04438 | BVP | Brivudine monophosphate | 2 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 1 |
| DB03233 | NYM | 3'-deoxy-3'-aminothymidine monophosphate | 1 |
| DB03846 | 5HU | 2'-deoxy-5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate) | 1 |
| DB04395 | — | Phosphoaminophosphonic Acid-Adenylate Ester | 1 |
| DB04447 | DTT | 1,4-Dithiothreitol | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 73 |
| TMP | THYMIDINE-5'-PHOSPHATE | 55 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 45 |
| CL | CHLORIDE ION | 42 |
| ATM | 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | 17 |
| NAmetal | SODIUM ION | 16 |
| TYD | THYMIDINE-5'-DIPHOSPHATE | 15 |
| T5A | P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE | 13 |
| CAmetal | CALCIUM ION | 9 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 7 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 6 |
| THM | THYMIDINE | 5 |
| 0DN | 5'-deoxy-5'-fluorothymidine | 4 |
| 2DT | 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE | 4 |
| 74W | 1-[4-chloranyl-3-(trifluoromethyl)phenyl]-3-[[(2R,3S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl]thiourea | 3 |
| ACP | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | 3 |
| DGP | 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | 3 |
| 0DF | 1-methyl-6-phenyl-1,3-dihydro-2H-imidazo[4,5-b]pyridin-2-one | 2 |
| 0DJ | 3-(1-methyl-2-oxo-2,3-dihydro-1H-imidazo[4,5-b]pyridin-6-yl)benzamide | 2 |
| 0Y5 | 4-{[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]methyl}-2-[3-(trifluoromethyl)phenoxy]benzoic acid | 2 |