H-group (homology)
2004.1 P-loop domains-related
Ligands and drugs
109,544
Member domains
18,753
with ligand contacts (≤ 4 Å)
17.1% of members
17,976
with DrugDomain annotations
16.4% of members
15,892
with a DrugBank compound
14.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2004.1 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB16833 | ADP | Adenosine disphosphate | 4,725 |
| DB00171 | ATP | ATP | 3,178 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 1,823 |
| DB02930 | AGS | Adenosine 5'-[gamma-thio]triphosphate | 1,210 |
| DB02082 | GNP | Phosphoaminophosphonic acid guanylate ester | 935 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 668 |
| DB04444 | ALF | Tetrafluoroaluminate Ion | 281 |
| DB03725 | GCP | 5'-Guanylylmethylenebisphosphonate | 239 |
| DB01812 | A3P | Adenosine 3',5'-diphosphate | 161 |
| DB01864 | GSP | 5'-Guanosine-Diphosphate-Monothiophosphate | 156 |
| DB04005 | UTP | Uridine 5'-triphosphate | 135 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 127 |
| DB00131 | AMP | Adenosine phosphate | 122 |
| DB01717 | AP5 | Bis(Adenosine)-5'-Pentaphosphate | 116 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 111 |
| DB03429 | CDL | Tetrastearoyl cardiolipin | 95 |
| DB03435 | UDP | Uridine-5'-Diphosphate | 90 |
| DB03222 | DTP | dATP | 83 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 71 |
| DB03909 | ACP | Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate | 71 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 9,035 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 5,001 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 3,352 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 1,827 |
| AGS | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | 1,453 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 1,063 |
| GNP | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | 930 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 666 |
| CL | CHLORIDE ION | 582 |
| BEF | BERYLLIUM TRIFLUORIDE ION | 454 |
| CAmetal | CALCIUM ION | 449 |
| ZNmetal | ZINC ION | 372 |
| ALF | TETRAFLUOROALUMINATE ION | 315 |
| NAmetal | SODIUM ION | 265 |
| SF4 | IRON/SULFUR CLUSTER | 246 |
| GCP | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 240 |
| MNmetal | MANGANESE (II) ION | 169 |
| A3P | ADENOSINE-3'-5'-DIPHOSPHATE | 168 |
| GSP | 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE | 156 |
| AF3 | ALUMINUM FLUORIDE | 139 |