ECOD
T-group (topology)

2004.11.1 PEP carboxykinase N-terminal domain

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Ligands and drugs

572
Member domains
138
with ligand contacts (≤ 4 Å)
24.1% of members
116
with DrugDomain annotations
20.3% of members
98
with a DrugBank compound
17.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2004.11.1 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04137GTPGuanosine-5'-Triphosphate27
DB01819PEPPhosphoenolpyruvate13
DB00171ATPATP11
DB02156SPVSulfopyruvate10
DB02726PGA2-Phosphoglycolic Acid9
DB00119PYRPyruvic acid7
DB02637OAAOxaloacetate Ion5
DB09157CO2Carbon dioxide5
DB03902OXDOxalic Acid4
DB02175MLAMalonic acid3
DB00529PPFFoscarnet2
DB03725GCP5'-Guanylylmethylenebisphosphonate2
DB01796NTMQuinolinic Acid1
DB033793PP2-Carboxyethylphosphonic Acid1

Most frequently bound compounds

PDB ligandNameDomains in contact
MNmetalMANGANESE (II) ION108
NAmetalSODIUM ION57
SPVSULFOPYRUVATE16
PEPPHOSPHOENOLPYRUVATE15
PGA2-PHOSPHOGLYCOLIC ACID14
CAmetalCALCIUM ION12
PYRPYRUVIC ACID7
CO2CARBON DIOXIDE5
THJTHIOSULFATE5
GTPGUANOSINE-5'-TRIPHOSPHATE4
MLAMALONIC ACID4
OAAOXALOACETATE ION4
OXDOXALIC ACID4
CLCHLORIDE ION3
03Smethanesulfonic acid2
1WD3-sulfanylpyridine-2-carboxylic acid2
AF3ALUMINUM FLUORIDE2
ATPADENOSINE-5'-TRIPHOSPHATE2
PPFPHOSPHONOFORMIC ACID2
ZNmetalZINC ION2