F-group (family)
2004.11.1.2 PEPCK_N
Ligands and drugs
227
Member domains
103
with ligand contacts (≤ 4 Å)
45.4% of members
82
with DrugDomain annotations
36.1% of members
70
with a DrugBank compound
30.8% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2004.11.1.2 belongs to X-group 2004 P-loop domains-like, which binds 7.5 ligand superclasses per 20 proteins, narrower than 53% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB04137 | GTP | Guanosine-5'-Triphosphate | 27 |
| DB01819 | PEP | Phosphoenolpyruvate | 13 |
| DB02156 | SPV | Sulfopyruvate | 10 |
| DB02726 | PGA | 2-Phosphoglycolic Acid | 9 |
| DB02175 | MLA | Malonic acid | 3 |
| DB02637 | OAA | Oxaloacetate Ion | 3 |
| DB00119 | PYR | Pyruvic acid | 2 |
| DB00529 | PPF | Foscarnet | 2 |
| DB03725 | GCP | 5'-Guanylylmethylenebisphosphonate | 2 |
| DB03902 | OXD | Oxalic Acid | 2 |
| DB09157 | CO2 | Carbon dioxide | 2 |
| DB01796 | NTM | Quinolinic Acid | 1 |
| DB03379 | 3PP | 2-Carboxyethylphosphonic Acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MNmetal | MANGANESE (II) ION | 95 |
| NAmetal | SODIUM ION | 56 |
| SPV | SULFOPYRUVATE | 16 |
| PEP | PHOSPHOENOLPYRUVATE | 15 |
| PGA | 2-PHOSPHOGLYCOLIC ACID | 14 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 4 |
| MLA | MALONIC ACID | 4 |
| CL | CHLORIDE ION | 3 |
| OAA | OXALOACETATE ION | 3 |
| 1WD | 3-sulfanylpyridine-2-carboxylic acid | 2 |
| CO2 | CARBON DIOXIDE | 2 |
| OXD | OXALIC ACID | 2 |
| PPF | PHOSPHONOFORMIC ACID | 2 |
| PYR | PYRUVIC ACID | 2 |
| ZNmetal | ZINC ION | 2 |
| 3PP | 3-PHOSPHONOPROPANOIC ACID | 1 |
| NTM | QUINOLINIC ACID | 1 |
| O2Y | 3-[(carboxymethyl)sulfanyl]pyridine-2-carboxylic acid | 1 |
| SAT | sulfoacetic acid | 1 |