F-group (family)

2007.2.5.1 Rhodanese

Open in classification tree →Pfam PF00581 →

Ligands and drugs

1,500

Member domains

203

with ligand contacts (≤ 4 Å)

13.5% of members

203

with DrugDomain annotations

13.5% of members

108

with a DrugBank compound

7.2% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2007.2.5.1 belongs to X-group 2007 Flavodoxin-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 77% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB01992	COA	Coenzyme A	18
DB00119	PYR	Pyruvic acid	6
DB03345	BME	Mercaptoethanol	4
DB01842	PAP	3'-Phosphate-Adenosine-5'-Diphosphate	2
DB02761	—	S-Mercaptocysteine	2
DB02956	PS5	Pentasulfide-Sulfur	2
DB02774	PDO	1,3-Propanediol	1
DB03434	MPO	3-(N-morpholino)propanesulfonic acid	1
DB03661	—	L-cysteic acid	1
DB04053	PO2	Hypophosphite	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
CL	CHLORIDE ION	66
MGmetal	MAGNESIUM ION	44
NAmetal	SODIUM ION	26
COA	COENZYME A	18
AVJ	N,N,N-trimethyl-histidine	16
BR	BROMIDE ION	11
ZNmetal	ZINC ION	11
LW8	trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium	8
MNmetal	MANGANESE (II) ION	6
PYR	PYRUVIC ACID	6
SO3	SULFITE ION	5
7N3	2-[2-[(4-oxidanylidene-3~{H}-quinazolin-2-yl)sulfanyl]ethanoylamino]thiophene-3-carboxamide	4
7NC	4-methyl-2-(2-naphthalen-1-yl-2-oxidanylidene-ethyl)sulfanyl-1~{H}-pyrimidin-6-one	4
BME	BETA-MERCAPTOETHANOL	4
DV6	[(2S)-3-[(2S)-2-(disulfanyl)-2,3-dihydro-1H-imidazol-4-yl]-1-oxidanyl-1-oxidanylidene-propan-2-yl]-trimethyl-azanium	4
PDO	1,3-PROPANDIOL	3
IOD	IODIDE ION	2
LPB	5-[(3S)-1,2-dithiolan-3-yl]pentanoic acid	2
PAP	3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE	2
PS5	PENTASULFIDE-SULFUR	2