T-group (topology)
2007.3.1 Succinyl-CoA synthetase domains
Ligands and drugs
1,547
Member domains
282
with ligand contacts (≤ 4 Å)
18.2% of members
264
with DrugDomain annotations
17.1% of members
217
with a DrugBank compound
14.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2007.3.1 belongs to X-group 2007 Flavodoxin-like, which binds 8.9 ligand superclasses per 20 proteins, broader than 77% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01992 | COA | Coenzyme A | 110 |
| DB02637 | OAA | Oxaloacetate Ion | 10 |
| DB00139 | SIN | Succinic acid | 6 |
| DB02831 | 2HP | Dihydrogenphosphate | 6 |
| DB09459 | TLA | L-tartaric acid | 6 |
| DB16833 | ADP | Adenosine disphosphate | 5 |
| DB01829 | DCA | Desulfo-coenzyme A | 4 |
| DB03909 | ACP | Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate | 4 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 2 |
| DB11936 | — | — | 2 |
| DB01694 | TAR | D-tartaric acid | 1 |
| DB02082 | GNP | Phosphoaminophosphonic acid guanylate ester | 1 |
| DB03725 | GCP | 5'-Guanylylmethylenebisphosphonate | 1 |
| DB12695 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| COA | COENZYME A | 114 |
| Q5B | (3S)-citryl-Coenzyme A | 38 |
| MGmetal | MAGNESIUM ION | 36 |
| OAA | OXALOACETATE ION | 20 |
| ACO | ACETYL COENZYME *A | 19 |
| NAmetal | SODIUM ION | 12 |
| Y2A | (2S)-2-hydroxy-2-[2-oxo-2-(phosphonooxy)ethyl]butanedioic acid | 10 |
| CL | CHLORIDE ION | 9 |
| 2HP | DIHYDROGENPHOSPHATE ION | 8 |
| 7A2 | 3-C-carboxy-2-deoxy-L-threo-pentaric acid | 6 |
| SIN | SUCCINIC ACID | 6 |
| TLA | L(+)-TARTARIC ACID | 6 |
| 7A3 | 3-C-carboxy-2-deoxy-D-erythro-pentaric acid | 4 |
| ACP | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | 4 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 4 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 4 |
| DCA | DESULFO-COENZYME A | 4 |
| HGmetal | MERCURY (II) ION | 4 |
| LBG | methyl 3-chloro-5-[(4,6-difluoro[1,1'-biphenyl]-3-yl)sulfamoyl]-4-hydroxybenzoate | 4 |
| 2OP | (2S)-2-HYDROXYPROPANOIC ACID | 2 |