T-group (topology)
206.1.3 ATP-grasp
Ligands and drugs
6,816
Member domains
1,413
with ligand contacts (≤ 4 Å)
20.7% of members
1,187
with DrugDomain annotations
17.4% of members
1,049
with a DrugBank compound
15.4% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 206.1.3 belongs to X-group 206 Protein kinase/SAICAR synthase/ATP-grasp, which binds 10.2 ligand superclasses per 20 proteins, broader than 96% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB16833 | ADP | Adenosine disphosphate | 329 |
| DB03909 | ACP | Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate | 230 |
| DB00171 | ATP | ATP | 103 |
| DB00131 | AMP | Adenosine phosphate | 86 |
| DB00129 | ORN | Ornithine | 35 |
| DB01786 | DAL | D-Alanine | 33 |
| DB01992 | COA | Coenzyme A | 29 |
| DB03227 | NMN | Nicotinamide Mononucleotide | 16 |
| DB03408 | 3GC | gamma-Glutamylcysteine | 11 |
| DB14128 | NAD | Nadide | 10 |
| DB00121 | — | Biotin | 8 |
| DB00125 | ARG | Arginine | 8 |
| DB00143 | GSH | Glutathione | 8 |
| DB02930 | AGS | Adenosine 5'-[gamma-thio]triphosphate | 7 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 7 |
| DB00142 | GLU | Glutamic acid | 6 |
| DB02859 | S1A | Soraphen A | 6 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 6 |
| DB03148 | A12 | Adenosine 5'-methylenediphosphate | 5 |
| DB00128 | ASP | Aspartic acid | 4 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 608 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 429 |
| ACP | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | 270 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 170 |
| CL | CHLORIDE ION | 157 |
| AMP | ADENOSINE MONOPHOSPHATE | 112 |
| MNmetal | MANGANESE (II) ION | 103 |
| Kmetal | POTASSIUM ION | 101 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 80 |
| NAmetal | SODIUM ION | 42 |
| ORN | L-ornithine | 40 |
| CAmetal | CALCIUM ION | 35 |
| DAL | D-ALANINE | 34 |
| COA | COENZYME A | 26 |
| AGS | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | 18 |
| BTN | BIOTIN | 18 |
| NMN | BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE | 17 |
| 3GC | GAMMA-GLUTAMYLCYSTEINE | 10 |
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 10 |
| 2TI | (2~{S})-2-[[[(3~{R})-3-acetamido-4-(ethylamino)-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid | 8 |