F-group (family)
212.1.1.2 DNA_gyraseB
Ligands and drugs
364
Member domains
83
with ligand contacts (≤ 4 Å)
22.8% of members
72
with DrugDomain annotations
19.8% of members
19
with a DrugBank compound
5.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 212.1.1.2 belongs to X-group 212 Ribosomal protein S5 domain 2-like, which binds 9.4 ligand superclasses per 20 proteins, broader than 86% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00380 | CDX | Dexrazoxane | 4 |
| DB00694 | — | Daunorubicin | 2 |
| DB00997 | — | Doxorubicin | 2 |
| DB05022 | — | — | 2 |
| DB06362 | — | — | 2 |
| DB06421 | — | — | 2 |
| DB00160 | ALA | Alanine | 1 |
| DB00171 | ATP | ATP | 1 |
| DB00276 | — | Amsacrine | 1 |
| DB00385 | — | — | 1 |
| DB00444 | — | Teniposide | 1 |
| DB00445 | — | — | 1 |
| DB00467 | — | — | 1 |
| DB00487 | — | — | 1 |
| DB00685 | — | Trovafloxacin | 1 |
| DB00978 | — | — | 1 |
| DB01059 | — | — | 1 |
| DB01165 | — | — | 1 |
| DB01177 | — | Idarubicin | 1 |
| DB01179 | — | Podofilox | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 62 |
| MGmetal | MAGNESIUM ION | 6 |
| NAmetal | SODIUM ION | 3 |
| CDX | (S)-4,4'-(1-METHYL-1,2-ETHANEDIYL)BIS-2,6-PIPERAZINEDIONE | 2 |
| IOD | IODIDE ION | 2 |
| ALA | ALANINE | 1 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 1 |
| BEF | BERYLLIUM TRIFLUORIDE ION | 1 |
| ITH | 4-[(2S,3R)-3-[3,5-bis(oxidanylidene)piperazin-1-ium-1-yl]butan-2-yl]piperazin-4-ium-2,6-dione | 1 |
| Kmetal | POTASSIUM ION | 1 |