F-group (family)
212.1.1.25 MVD-like_N
Ligands and drugs
157
Member domains
85
with ligand contacts (≤ 4 Å)
54.1% of members
83
with DrugDomain annotations
52.9% of members
56
with a DrugBank compound
35.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 212.1.1.25 belongs to X-group 212 Ribosomal protein S5 domain 2-like, which binds 9.4 ligand superclasses per 20 proteins, broader than 86% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02930 | AGS | Adenosine 5'-[gamma-thio]triphosphate | 12 |
| DB00173 | ADE | Adenine | 5 |
| DB16833 | ADP | Adenosine disphosphate | 5 |
| DB00131 | AMP | Adenosine phosphate | 2 |
| DB03518 | MEV | Mevalonic acid | 2 |
| DB00171 | ATP | ATP | 1 |
| DB03909 | ACP | Adenosine-5'-[Beta, Gamma-Methylene]Triphosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| DP6 | (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID | 30 |
| AGS | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | 12 |
| FM0 | (3R)-3-(fluoromethyl)-3-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}pentanoic acid | 7 |
| 2P0 | 1-({[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}acetyl)-L-proline | 6 |
| PMV | (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID | 6 |
| ADE | ADENINE | 5 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 5 |
| 3S4 | (3R)-5-hydroxy-3-methyl-3-(phosphonooxy)pentanoic acid | 2 |
| AMP | ADENOSINE MONOPHOSPHATE | 2 |
| COmetal | COBALT (II) ION | 2 |
| MEV | (R)-MEVALONATE | 2 |
| MGmetal | MAGNESIUM ION | 2 |
| ACP | PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | 1 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 1 |
| BEF | BERYLLIUM TRIFLUORIDE ION | 1 |
| NAmetal | SODIUM ION | 1 |