F-group (family)
212.1.1.3 GHMP_kinases_N
Ligands and drugs
1,307
Member domains
87
with ligand contacts (≤ 4 Å)
6.7% of members
73
with DrugDomain annotations
5.6% of members
56
with a DrugBank compound
4.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 212.1.1.3 belongs to X-group 212 Ribosomal protein S5 domain 2-like, which binds 9.4 ligand superclasses per 20 proteins, broader than 86% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB16833 | ADP | Adenosine disphosphate | 13 |
| DB03687 | CDM | 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol | 5 |
| DB00167 | ILE | Isoleucine | 4 |
| DB00171 | ATP | ATP | 4 |
| DB03518 | MEV | Mevalonic acid | 3 |
| DB01632 | PRP | 5-O-phosphono-alpha-D-ribofuranosyl diphosphate | 2 |
| DB02097 | CTN | Cytidine | 2 |
| DB02930 | AGS | Adenosine 5'-[gamma-thio]triphosphate | 2 |
| DB03403 | C5P | Cytidine-5'-Monophosphate | 2 |
| DB04555 | CDP | Cytidine-5'-Diphosphate | 2 |
| DB04695 | FPS | Farnesyl thiopyrophosphate | 2 |
| DB00156 | THR | Threonine | 1 |
| DB04160 | PPV | Pyrophosphoric acid | 1 |
| DB04193 | HSE | L-Homoserine | 1 |
| DB04349 | PGO | (S)-propane-1,2-diol | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ADP | ADENOSINE-5'-DIPHOSPHATE | 21 |
| MGmetal | MAGNESIUM ION | 16 |
| CL | CHLORIDE ION | 13 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 12 |
| CDM | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | 7 |
| BR | BROMIDE ION | 5 |
| MEV | (R)-MEVALONATE | 5 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 4 |
| ILE | ISOLEUCINE | 4 |
| CAmetal | CALCIUM ION | 3 |
| PMV | (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID | 3 |
| AGS | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | 2 |
| C5P | CYTIDINE-5'-MONOPHOSPHATE | 2 |
| CDP | CYTIDINE-5'-DIPHOSPHATE | 2 |
| CTN | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | 2 |
| GVS | ethyl {3-[4-amino-5-{3-[(cyclopropylsulfonyl)amino]prop-1-yn-1-yl}-2-oxopyrimidin-1(2H)-yl]oxetan-3-yl}acetate | 2 |
| Kmetal | POTASSIUM ION | 2 |
| MAN | alpha-D-mannopyranose | 2 |
| NAmetal | SODIUM ION | 2 |
| NVG | 4-AMINO-1-(5-{[3-(1H-BENZIMIDAZOL-2-YL)PROPANOYL]AMINO}-5-DEOXY-ALPHA-L-LYXOFURANOSYL)PYRIMIDIN-2(1H)-ONE | 2 |