X-group (possible homology)

226 POZ domain

Ligands and drugs

4,537
Member domains
490
with ligand contacts (≤ 4 Å)
10.8% of members
307
with DrugDomain annotations
6.8% of members
136
with a DrugBank compound
3.0% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

21
Proteins with classified ligands
9
Superclasses bound (of 23)
8.9
Superclasses per 20 proteins
broader than 77% of the 256 X-groups with enough proteins to compare (median 7.6)

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

SuperclassProteinsExpected
0.25×observed / expected4×
RatioSignificance
Homogeneous metal compounds1610.21.57×q = 0.03
Nucleosides, nucleotides, and analogues05.70q = 4.9e-3
Organosulfur compounds30.47.04×not tested
Phenylpropanoids and polyketides10.42.32×not tested
Benzenoids21.51.32×not tested
Organoheterocyclic compounds33.20.94×not tested
Organic acids and derivatives33.20.94×not tested
Homogeneous non-metal compounds34.50.67×not tested
Organic oxygen compounds24.10.48×not tested
Lipids and lipid-like molecules12.30.43×not tested
enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

DrugBankPDB ligandNameDomains
DB06637——15
DB00142GLUGlutamic acid4
DB00280——2
DB00458—Imipramine2
DB00615RBTRifabutin2
DB06217——2
DB11633—Isavuconazole2
DB00125ARGArginine1
DB00134METMethionine1
DB00174ASNAsparagine1
DB00321—Amitriptyline1
DB00753—Isoflurane1
DB00845——1
DB01028——1
DB01115—Nifedipine1
DB01189——1
DB02299—Arginineamide1
DB04522—Dexfosfoserine1
DB04855——1
DB08837—Tetraethylammonium1

Most frequently bound compounds

PDB ligandNameDomains in contact
CLCHLORIDE ION188
ZNmetalZINC ION72
7ZO5-[(5-chloranylpyrimidin-4-yl)amino]-1,3-dihydroindol-2-one16
A1AB94-chloro-6-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]pyrimidine-5-carbonitrile15
A1ACA5-[(5-bromo-2-chloropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one15
A1ACB5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one15
A1ACC(8S)-5-chloro-7-[(2-oxo-2,3-dihydro-1H-indol-5-yl)amino]pyrazolo[1,5-a]pyrimidine-3-carbonitrile15
A1ACL5-[(5,6-dichloropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one15
A1ACR5-[(2,5-dichloropyridin-4-yl)amino]-1,3-dihydro-2H-indol-2-one15
A1ACW5-[(2-chloro-5-fluoropyrimidin-4-yl)amino]-1,3-dihydro-2H-indol-2-one15
A1ADA5-{[5-chloro-2-(dimethylamino)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one15
SXJ(13alpha,18alpha)-2-cyano-3-hydroxy-12-oxooleana-2,9(11)-dien-28-oic acid9
U522-[6-[[5-chloranyl-2-[(3~{S},5~{R})-3,5-dimethylpiperidin-1-yl]pyrimidin-4-yl]amino]-1-methyl-2-oxidanylidene-quinolin-3-yl]oxy-~{N}-methyl-ethanamide9
NAmetalSODIUM ION8
9J34-ethoxy-4-oxobutanoic acid6
E1IN-[5-chloro-2-(morpholin-4-yl)pyridin-4-yl]-2-[5-(3-cyano-4-hydroxy-5-methylphenyl)-3-methyl-2-(1-methyl-1H-pyrazol-4-yl)-4-oxo-3,4-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]acetamide6
UNXUNKNOWN ATOM OR ION6
A1L9Bmethyl (4aS,6aR,6bS,8aR,12aS,14aR,14bS)-11-cyano-2,2,6a,6b,9,9,12a-heptamethyl-10,14-bis(oxidanylidene)-1,3,4,5,6,7,8,8a,14a,14b-decahydropicene-4a-carboxylate5
POV(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate5
8HH~{N}-ethyl-5-pyridin-3-yl-pyrazolo[1,5-a]pyrimidin-7-amine4