T-group (topology)
234.1.1 Microbial ribonucleases
Ligands and drugs
409
Member domains
210
with ligand contacts (≤ 4 Å)
51.3% of members
212
with DrugDomain annotations
51.8% of members
170
with a DrugBank compound
41.6% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 234.1.1 belongs to X-group 234 Microbial ribonucleases-like, which has 14 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01937 | 2GP | Guanosine-2'-monophosphate | 68 |
| DB03315 | 3GP | Guanosine 3'-monophosphate | 26 |
| DB03178 | SGP | Guanosine-2',3'-cyclophosphorothioate | 9 |
| DB02379 | BGC | Beta-D-Glucose | 5 |
| DB02857 | GMP | Guanosine | 3 |
| DB03266 | PTD | Glutaral | 3 |
| DB03904 | URE | Urea | 3 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| 2GP | GUANOSINE-2'-MONOPHOSPHATE | 67 |
| CAmetal | CALCIUM ION | 62 |
| 3GP | GUANOSINE-3'-MONOPHOSPHATE | 24 |
| ZNmetal | ZINC ION | 23 |
| SGP | GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE | 8 |
| BGC | beta-D-glucopyranose | 5 |
| NAmetal | SODIUM ION | 5 |
| 2AM | ADENOSINE-2'-MONOPHOSPHATE | 4 |
| CL | CHLORIDE ION | 3 |
| Kmetal | POTASSIUM ION | 3 |
| PTD | PENTANEDIAL | 3 |
| URE | UREA | 3 |
| 3AM | [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate | 2 |
| BRJ | 2-BROMOETHANOL | 2 |
| GMP | GUANOSINE | 2 |
| PGP | GUANOSINE-3',5'-DIPHOSPHATE | 2 |
| UNX | UNKNOWN ATOM OR ION | 2 |
| GPC | 2'-FLUOROGUANYLYL-(3'-5')-PHOSPHOCYTIDINE | 1 |
| GPG | GUANYLYL-2',5'-PHOSPHOGUANOSINE | 1 |
| LImetal | LITHIUM ION | 1 |