H-group (homology)
2488.1 alpha/beta knot
Ligands and drugs
2,811
Member domains
387
with ligand contacts (≤ 4 Å)
13.8% of members
355
with DrugDomain annotations
12.6% of members
233
with a DrugBank compound
8.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2488.1 belongs to X-group 2488 alpha/beta knot, which binds 6.6 ligand superclasses per 20 proteins, narrower than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01752 | SAH | S-adenosyl-L-homocysteine | 70 |
| DB00118 | SAM | Ademetionine | 62 |
| DB01910 | SFG | Sinefungin | 21 |
| DB02282 | MTA | 5'-S-methyl-5'-thioadenosine | 8 |
| DB00640 | ADN | Adenosine | 5 |
| DB00173 | ADE | Adenine | 2 |
| DB04130 | 5OB | 5-Methoxybenzimidazole | 2 |
| DB04349 | PGO | (S)-propane-1,2-diol | 2 |
| DB00135 | TYR | Tyrosine | 1 |
| DB03345 | BME | Mercaptoethanol | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| SAH | S-ADENOSYL-L-HOMOCYSTEINE | 88 |
| SAM | S-ADENOSYLMETHIONINE | 67 |
| CL | CHLORIDE ION | 26 |
| SFG | SINEFUNGIN | 22 |
| MTA | 5'-DEOXY-5'-METHYLTHIOADENOSINE | 9 |
| ADN | ADENOSINE | 6 |
| MGmetal | MAGNESIUM ION | 6 |
| UNX | UNKNOWN ATOM OR ION | 4 |
| 21X | N-[4-(aminomethyl)benzyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide | 3 |
| 9D0 | N-({4-[(octylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide | 3 |
| BWR | ~{N}-[[4-[(4-azanylpiperidin-1-yl)methyl]phenyl]methyl]-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidine-5-carboxamide | 3 |
| EEM | [(3S)-3-amino-4-hydroxy-4-oxo-butyl]-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]-methyl-selanium | 3 |
| NAmetal | SODIUM ION | 3 |
| 15P | POLYETHYLENE GLYCOL (N=34) | 2 |
| 21W | N-(4-{[(1H-imidazol-2-ylmethyl)amino]methyl}benzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide | 2 |
| 5OB | 5-METHOXYBENZIMIDAZOLE | 2 |
| 6GU | 6-chloroguanine | 2 |
| 6SD | 3-(4-methoxyphenyl)-1~{H}-pyrazol-5-amine | 2 |
| 97T | 2-(1,2-oxazol-5-yl)phenol | 2 |
| 9D3 | N-({4-[(diethylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide | 2 |