F-group (family)

2488.1.1.3 tRNA_m1G_MT

Open in classification tree →Pfam PF01746 →

Ligands and drugs

821

Member domains

204

with ligand contacts (≤ 4 Å)

24.8% of members

199

with DrugDomain annotations

24.2% of members

with a DrugBank compound

10.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 2488.1.1.3 belongs to X-group 2488 alpha/beta knot, which binds 6.6 ligand superclasses per 20 proteins, narrower than 66% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB01752	SAH	S-adenosyl-L-homocysteine	19
DB00118	SAM	Ademetionine	16
DB01910	SFG	Sinefungin	11
DB00173	ADE	Adenine	2
DB04130	5OB	5-Methoxybenzimidazole	2
DB00640	ADN	Adenosine	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
SAH	S-ADENOSYL-L-HOMOCYSTEINE	21
SAM	S-ADENOSYLMETHIONINE	16
SFG	SINEFUNGIN	11
CL	CHLORIDE ION	9
MGmetal	MAGNESIUM ION	4
21X	N-[4-(aminomethyl)benzyl]-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide	3
9D0	N-({4-[(octylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide	3
BWR	~{N}-[[4-[(4-azanylpiperidin-1-yl)methyl]phenyl]methyl]-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidine-5-carboxamide	3
NAmetal	SODIUM ION	3
21W	N-(4-{[(1H-imidazol-2-ylmethyl)amino]methyl}benzyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide	2
5OB	5-METHOXYBENZIMIDAZOLE	2
6GU	6-chloroguanine	2
6SD	3-(4-methoxyphenyl)-1~{H}-pyrazol-5-amine	2
97T	2-(1,2-oxazol-5-yl)phenol	2
9D3	N-({4-[(diethylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide	2
9WO	N-{(3S)-1-[3-(pyridin-4-yl)-1H-pyrazol-5-yl]piperidin-3-yl}-1H-indole-2-carboxamide	2
ABV	1,3-benzothiazol-2-amine	2
ADE	ADENINE	2
FBB	6-fluoro-1,3-benzothiazol-2-amine	2
GOJ	ethyl 1~{H}-pyrazole-4-carboxylate	2