F-group (family)
2492.1.1.1 dCMP_cyt_deam_1
Ligands and drugs
810
Member domains
332
with ligand contacts (≤ 4 Å)
41.0% of members
274
with DrugDomain annotations
33.8% of members
129
with a DrugBank compound
15.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2492.1.1.1 belongs to X-group 2492 Cytidine deaminase-like, which binds 7.2 ligand superclasses per 20 proteins, narrower than 57% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03798 | DCM | 2'-Deoxycytidine-5'-Monophosphate | 14 |
| DB03800 | DU | Deoxyuridine monophosphate | 12 |
| DB02745 | URI | Uridine | 11 |
| DB03562 | THU | Tetrahydrodeoxyuridine | 10 |
| DB02452 | TTP | Thymidine 5'-triphosphate | 9 |
| DB01667 | AZG | 8-azaguanine | 8 |
| DB01643 | TMP | Thymidine monophosphate | 7 |
| DB02097 | CTN | Cytidine | 5 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 5 |
| DB03939 | HPY | (4S)-4-hydroxy-3,4-dihydro-2(1H)-pyrimidinone | 4 |
| DB04280 | DDN | 3,4-Dihydro-2'-deoxyuridine-5'-monophosphate | 4 |
| DB02210 | HEZ | Hexane-1,6-Diol | 3 |
| DB00640 | ADN | Adenosine | 2 |
| DB01849 | DUC | Dihydrouracil | 2 |
| DB02857 | GMP | Guanosine | 2 |
| DB03185 | BRD | 1-Beta-Ribofuranosyl-1,3-Diazepinone | 2 |
| DB03345 | BME | Mercaptoethanol | 2 |
| DB04335 | NOS | Inosine | 2 |
| DB04649 | BST | TETRAHEDRAL INTERMEDIATE OF BLASTICIDIN S | 2 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 327 |
| CL | CHLORIDE ION | 24 |
| DCM | 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | 14 |
| DU | 2'-DEOXYURIDINE-5'-MONOPHOSPHATE | 12 |
| MGmetal | MAGNESIUM ION | 11 |
| URI | URIDINE | 11 |
| THU | TETRAHYDRODEOXYURIDINE | 10 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 9 |
| 4UO | 2,3-dihydroxanthosine | 8 |
| AZG | 5-AMINO-1H-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-7-OL | 8 |
| CAmetal | CALCIUM ION | 7 |
| TMP | THYMIDINE-5'-PHOSPHATE | 7 |
| 6AM | 4,6-diamino-1,3,5-triazin-2-ol | 5 |
| CTN | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | 5 |
| DCP | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE | 5 |
| 5AZ | 6-amino-1,3,5-triazin-2(1H)-one | 4 |
| BLO | 1-(4-{[(3R)-3-AMINO-5-{[(Z)-AMINO(IMINO)METHYL](METHYL)AMINO}PENTANOYL]AMINO}-2,3,4-TRIDEOXY-D-ERYTHRO-HEX-2-ENOPYRANURONOSYL)-4-HYDROXYPYRIMIDIN-2(1H)-ONE | 4 |
| BLS | BLASTICIDIN S | 4 |
| BZE | 6-phenyl-1,3,5-triazine-2,4-diamine | 4 |
| DDN | 3,4-DIHYDRO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | 4 |