F-group (family)
2498.1.1.9 Peptidase_M1
Ligands and drugs
720
Member domains
397
with ligand contacts (≤ 4 Å)
55.1% of members
371
with DrugDomain annotations
51.5% of members
297
with a DrugBank compound
41.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 2498.1.1.9 belongs to X-group 2498 Zincin-like, which binds 9.5 ligand superclasses per 20 proteins, broader than 89% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 98 |
| DB03424 | BES | Ubenimex | 20 |
| DB00123 | LYS | Lysine | 9 |
| DB00125 | ARG | Arginine | 7 |
| DB00142 | GLU | Glutamic acid | 6 |
| DB00128 | ASP | Aspartic acid | 5 |
| DB00134 | MET | Methionine | 5 |
| DB00135 | TYR | Tyrosine | 5 |
| DB00149 | LEU | Leucine | 5 |
| DB00150 | TRP | Tryptophan | 3 |
| DB00160 | ALA | Alanine | 3 |
| DB02676 | B3P | 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol | 3 |
| DB00120 | PHE | Phenylalanine | 2 |
| DB03817 | DAB | L-2,4-diaminobutyric acid | 2 |
| DB04310 | BB2 | 2-[(Formyl-Hydroxy-Amino)-Methyl]-Heptanoic Acid [1-(2-Hydroxymethyl-Pyrrolidine-1-Carbonyl)-2-Methyl-Propyl]-Amide | 2 |
| DB06851 | 11X | N-(pyridin-3-ylmethyl)aniline | 2 |
| DB08466 | RE2 | 5-[2-(4-hydroxyphenyl)ethyl]benzene-1,3-diol | 2 |
| DB11781 | — | — | 2 |
| DB00133 | SER | Serine | 1 |
| DB00139 | SIN | Succinic acid | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 388 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 109 |
| NAmetal | SODIUM ION | 35 |
| MGmetal | MAGNESIUM ION | 28 |
| P52 | Nalpha-[(2S)-2-{[[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]methyl}-4-methylpentanoyl]-L-tryptophanamide | 24 |
| BES | 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID | 20 |
| YBmetal | YTTERBIUM (III) ION | 20 |
| LYS | LYSINE | 9 |
| ARG | ARGININE | 7 |
| BR | BROMIDE ION | 7 |
| GLU | GLUTAMIC ACID | 6 |
| 28T | 1-{4-oxo-4-[(2S)-pyrrolidin-2-yl]butanoyl}-L-proline | 5 |
| ASP | ASPARTIC ACID | 5 |
| B3P | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | 5 |
| CL | CHLORIDE ION | 5 |
| DJ3 | 5S-5,6-oxido-7,9-trans-11,14-cis-eicosatetraenoic acid | 5 |
| LEU | LEUCINE | 5 |
| MET | METHIONINE | 5 |
| N0Y | 1-benzyl-4-methoxybenzene | 5 |
| TYR | TYROSINE | 5 |