T-group (topology)
301.5.1 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
Ligands and drugs
718
Member domains
218
with ligand contacts (≤ 4 Å)
30.4% of members
209
with DrugDomain annotations
29.1% of members
162
with a DrugBank compound
22.6% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 301.5.1 belongs to X-group 301 Bacillus chorismate mutase-like, which binds 10.5 ligand superclasses per 20 proteins, broader than 97% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03403 | C5P | Cytidine-5'-Monophosphate | 43 |
| DB02552 | GPP | Geranyl Diphosphate | 34 |
| DB02097 | CTN | Cytidine | 18 |
| DB04555 | CDP | Cytidine-5'-Diphosphate | 18 |
| DB03961 | CDI | 2c-Methyl-D-Erythritol 2,4-Cyclodiphosphate | 8 |
| DB02456 | CAR | Aracytidine 5'-monophosphate | 6 |
| DB08214 | MSR | 4-(1H-IMIDAZOL-1-YL)PHENOL | 4 |
| DB00891 | SFY | Sulfapyridine | 3 |
| DB02175 | MLA | Malonic acid | 3 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 3 |
| DB04714 | IPE | ISOPENTENYL PYROPHOSPHATE | 3 |
| DB07780 | FPP | Farnesyl diphosphate | 3 |
| DB00311 | EZL | Ethoxzolamide | 2 |
| DB00819 | AZM | Acetazolamide | 2 |
| DB08451 | QMS | N-(QUINOLIN-8-YL)METHANESULFONAMIDE | 2 |
| DB00141 | NAG | N-Acetylglucosamine | 1 |
| DB01859 | SUD | 4-CDP-2-C-methyl-D-erythritol 2-phosphate | 1 |
| DB03687 | CDM | 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 146 |
| C5P | CYTIDINE-5'-MONOPHOSPHATE | 49 |
| MGmetal | MAGNESIUM ION | 49 |
| GPP | GERANYL DIPHOSPHATE | 28 |
| POP | PYROPHOSPHATE 2- | 24 |
| CDP | CYTIDINE-5'-DIPHOSPHATE | 22 |
| CTN | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | 15 |
| CL | CHLORIDE ION | 13 |
| MNmetal | MANGANESE (II) ION | 12 |
| 1AA | 5'-O-[({[(2-{[(2-AMINOPHENYL)CARBONYL]OXY}ETHYL)OXY]PHOSPHINATO}OXY)PHOSPHINATO]CYTIDINE | 6 |
| 717 | imidazo[2,1-b][1,3]thiazol-6-ylmethanol | 6 |
| CAR | CYTOSINE ARABINOSE-5'-PHOSPHATE | 6 |
| COmetal | COBALT (II) ION | 6 |
| CYT | 6-AMINOPYRIMIDIN-2(1H)-ONE | 6 |
| NAmetal | SODIUM ION | 5 |
| CDI | 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE | 4 |
| Kmetal | POTASSIUM ION | 4 |
| MSR | 4-(1H-IMIDAZOL-1-YL)PHENOL | 4 |
| 535 | ethyl 3-methyl-5,6-dihydroimidazo[2,1-b][1,3]thiazole-2-carboxylate | 3 |
| 829 | 5'-deoxy-5'-[(pyridin-4-ylcarbonyl)amino]cytidine | 3 |