T-group (topology)
304.102.1 Pseudouridine synthase
Ligands and drugs
2,232
Member domains
46
with ligand contacts (≤ 4 Å)
2.1% of members
42
with DrugDomain annotations
1.9% of members
26
with a DrugBank compound
1.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 304.102.1 belongs to X-group 304 Alpha-beta plaits, which binds 8.8 ligand superclasses per 20 proteins, broader than 75% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03419 | URA | Uracil | 2 |
| DB04447 | DTT | 1,4-Dithiothreitol | 2 |
| DB00171 | ATP | ATP | 1 |
| DB02517 | DGL | D-Glutamic Acid | 1 |
| DB03252 | DLY | D-Lysine | 1 |
| DB03685 | U5P | Uridine monophosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CL | CHLORIDE ION | 10 |
| MGmetal | MAGNESIUM ION | 5 |
| Kmetal | POTASSIUM ION | 3 |
| DTT | 2,3-DIHYDROXY-1,4-DITHIOBUTANE | 2 |
| FOU | (5S,6R)-5-FLUORO-6-HYDROXYDIHYDROPYRIMIDINE-2,4(1H,3H)-DIONE | 2 |
| UNX | UNKNOWN ATOM OR ION | 2 |
| URA | URACIL | 2 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 1 |
| BR | BROMIDE ION | 1 |
| CAmetal | CALCIUM ION | 1 |
| DGL | D-GLUTAMIC ACID | 1 |
| DLY | D-LYSINE | 1 |
| NAmetal | SODIUM ION | 1 |
| PTmetal | PLATINUM (II) ION | 1 |
| U5P | URIDINE-5'-MONOPHOSPHATE | 1 |
| ZNmetal | ZINC ION | 1 |