F-group (family)
304.34.1.1 NDK
Ligands and drugs
1,857
Member domains
541
with ligand contacts (≤ 4 Å)
29.1% of members
478
with DrugDomain annotations
25.7% of members
400
with a DrugBank compound
21.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 304.34.1.1 belongs to X-group 304 Alpha-beta plaits, which binds 8.8 ligand superclasses per 20 proteins, broader than 75% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB16833 | ADP | Adenosine disphosphate | 62 |
| DB03103 | TYD | Thymidine-5'- Diphosphate | 44 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 43 |
| DB04555 | CDP | Cytidine-5'-Diphosphate | 35 |
| DB03435 | UDP | Uridine-5'-Diphosphate | 30 |
| DB00131 | AMP | Adenosine phosphate | 15 |
| DB03491 | DGI | 2'-Deoxyguanosine-5'-Diphosphate | 12 |
| DB03699 | SCA | Succinyl-Coenzyme A | 12 |
| DB02315 | 35G | Cyclic GMP | 9 |
| DB03413 | DUD | Deoxyuridine-5'-Diphosphate | 8 |
| DB04447 | DTT | 1,4-Dithiothreitol | 7 |
| DB01992 | COA | Coenzyme A | 6 |
| DB04237 | TAM | Tris(Hydroxyethyl)Aminomethane | 6 |
| DB02180 | MYA | Myristoyl-Coa | 5 |
| DB02887 | D4T | Stavudine triphosphate | 4 |
| DB04366 | 3AN | 3'-Deoxy 3'-Amino Adenosine-5'-Diphosphate | 4 |
| DB04542 | AZD | Zidovudine diphosphate | 4 |
| DB01842 | PAP | 3'-Phosphate-Adenosine-5'-Diphosphate | 3 |
| DB02902 | PPS | 3'-phospho-5'-adenylyl sulfate | 3 |
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 169 |
| ADP | ADENOSINE-5'-DIPHOSPHATE | 73 |
| GDP | GUANOSINE-5'-DIPHOSPHATE | 48 |
| TYD | THYMIDINE-5'-DIPHOSPHATE | 43 |
| UDP | URIDINE-5'-DIPHOSPHATE | 36 |
| CDP | CYTIDINE-5'-DIPHOSPHATE | 34 |
| CL | CHLORIDE ION | 15 |
| AMP | ADENOSINE MONOPHOSPHATE | 13 |
| SCA | SUCCINYL-COENZYME A | 12 |
| DGI | 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE | 11 |
| VO4 | VANADATE ION | 11 |
| CMP | ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE | 8 |
| DUD | DEOXYURIDINE-5'-DIPHOSPHATE | 8 |
| DTT | 2,3-DIHYDROXY-1,4-DITHIOBUTANE | 7 |
| 35G | GUANOSINE-3',5'-MONOPHOSPHATE | 6 |
| 7QT | [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate | 6 |
| A7Z | 4-[4-(3-methoxyphenyl)-1-(prop-2-yn-1-yl)-1H-imidazol-5-yl]phenyl sulfurofluoridate | 6 |
| CAmetal | CALCIUM ION | 6 |
| COA | COENZYME A | 6 |
| EOI | [[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethyl-sulfanyl-phosphoryl] phosphono hydrogen phosphate | 6 |