F-group (family)
304.48.1.3 DNA_pol_B
Ligands and drugs
613
Member domains
266
with ligand contacts (≤ 4 Å)
43.4% of members
188
with DrugDomain annotations
30.7% of members
165
with a DrugBank compound
26.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 304.48.1.3 belongs to X-group 304 Alpha-beta plaits, which binds 8.8 ligand superclasses per 20 proteins, broader than 75% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02452 | TTP | Thymidine 5'-triphosphate | 32 |
| DB03222 | DTP | dATP | 26 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 21 |
| DB02181 | DGT | 2'-Deoxyguanosine-5'-Triphosphate | 18 |
| DB00171 | ATP | ATP | 14 |
| DB01965 | DUP | 2'-Deoxyuridine 5'-alpha,beta-imido-triphosphate | 9 |
| DB02857 | GMP | Guanosine | 5 |
| DB02883 | DOC | 2',3'-Dideoxycytidine-5'-Monophosphate | 4 |
| DB01972 | 5GP | Guanosine-5'-Monophosphate | 3 |
| DB04160 | PPV | Pyrophosphoric acid | 3 |
| DB04457 | DGP | 2'-Deoxyguanosine-5'-Monophosphate | 3 |
| DB00242 | — | Cladribine | 2 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 2 |
| DB04315 | GDP | Guanosine-5'-Diphosphate | 2 |
| DB17742 | 2ZE | Aphidicolin | 2 |
| DB00529 | PPF | Foscarnet | 1 |
| DB00631 | — | Clofarabine | 1 |
| DB01073 | — | — | 1 |
| DB01280 | — | — | 1 |
| DB02454 | FA2 | 5-(6-Amino-9h-Purin-9-Yl)-4-Hydroxytetrahydrofuran-3-Yl Dihydrogen Phosphate | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CAmetal | CALCIUM ION | 118 |
| MGmetal | MAGNESIUM ION | 75 |
| TTP | THYMIDINE-5'-TRIPHOSPHATE | 44 |
| DCP | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE | 30 |
| DTP | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE | 27 |
| DGT | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | 22 |
| SF4 | IRON/SULFUR CLUSTER | 15 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 14 |
| MNmetal | MANGANESE (II) ION | 13 |
| NAmetal | SODIUM ION | 13 |
| DUP | 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE | 9 |
| XG4 | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine | 8 |
| 9O7 | [(3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-oxolan-3-yl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate | 5 |
| CL | CHLORIDE ION | 5 |
| D3T | 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE | 5 |
| GMP | GUANOSINE | 5 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 4 |
| DDS | 2',3'-dideoxyadenosine triphosphate | 4 |
| DOC | 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE | 4 |
| 5GP | GUANOSINE-5'-MONOPHOSPHATE | 3 |