F-group (family)
330.1.1.2 Ribosomal_S5
Ligands and drugs
2,973
Member domains
488
with ligand contacts (≤ 4 Å)
16.4% of members
289
with DrugDomain annotations
9.7% of members
16
with a DrugBank compound
0.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 330.1.1.2 belongs to X-group 330 dsRBD-like, which binds 6.6 ligand superclasses per 20 proteins, narrower than 67% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00919 | SCM | Spectinomycin | 13 |
| DB00759 | TAC | Tetracycline | 2 |
| DB09130 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 432 |
| OHX | osmium (III) hexammine | 27 |
| SCM | SPECTINOMYCIN | 16 |
| Kmetal | POTASSIUM ION | 11 |
| UNX | UNKNOWN ATOM OR ION | 6 |
| WO2 | OCTADECATUNGSTENYL DIPHOSPHATE | 4 |
| TAC | TETRACYCLINE | 2 |
| Y7K | (2R,4R,4aS,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)-4-({[2-(oxan-4-yl)ethyl]amino}methyl)octahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4a,7,9(10aH)-tetrol | 2 |
| OIY | Streptothricin D | 1 |
| T1C | TIGECYCLINE | 1 |