H-group (homology)
3699.1 Spermidine synthase tetramerisation domain
Ligands and drugs
487
Member domains
176
with ligand contacts (≤ 4 Å)
36.1% of members
173
with DrugDomain annotations
35.5% of members
118
with a DrugBank compound
24.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 3699.1 belongs to X-group 3699 Spermidine synthase tetramerisation domain, which has 11 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02282 | MTA | 5'-S-methyl-5'-thioadenosine | 68 |
| DB02042 | 1PG | 2-(2-{2-[2-(2-Methoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol | 31 |
| DB03566 | SPD | Spermidine | 22 |
| DB00127 | SPM | Spermine | 15 |
| DB02995 | HAI | Cyclohexylammonium Ion | 8 |
| DB01917 | PUT | Putrescine | 6 |
| DB02844 | AAT | S-Adenosyl-1,8-Diamino-3-Thiooctane | 6 |
| DB02676 | B3P | 2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-Diol | 3 |
| DB00118 | SAM | Ademetionine | 2 |
| DB00640 | ADN | Adenosine | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MTA | 5'-DEOXY-5'-METHYLTHIOADENOSINE | 68 |
| S4M | 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE | 53 |
| 1PG | 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL | 31 |
| SPD | SPERMIDINE | 22 |
| SPM | SPERMINE | 15 |
| AG3 | 1-{4-[(3-aminopropyl)amino]butyl}guanidine | 9 |
| HAI | CYCLOHEXYLAMMONIUM ION | 8 |
| JFQ | trans-N-(3-aminopropyl)cyclohexane-1,4-diamine | 7 |
| AAT | S-ADENOSYL-1,8-DIAMINO-3-THIOOCTANE | 6 |
| PUT | 1,4-DIAMINOBUTANE | 6 |
| TER | N-(3-AMINO-PROPYL)-N-(5-AMINOPROPYL)-1,4-DIAMINOBUTANE | 5 |
| 4JV | 5-[(4-methylbenzyl)oxy]quinazoline-2,4-diamine | 4 |
| 4JW | (2S)-N-methyl-N-phenyl-2,3-dihydro-1,4-benzodioxine-2-carboxamide | 4 |
| 4K2 | quinolin-8-yl piperidine-1-carboxylate | 4 |
| 8OF | N-(4-methoxyphenyl)quinolin-4-amine | 4 |
| 8QO | 5-methoxy-2-[(5R)-5-methyl-4,5-dihydro-1H-imidazol-2-yl]phenol | 4 |
| BSX | 2-(2-fluorophenyl)ethanamine | 4 |
| DSH | 5'-S-(3-aminopropyl)-5'-thioadenosine | 4 |
| 2MH | cis-4-methylcyclohexanamine | 3 |
| 4MN | 4-METHYLANILINE | 3 |