F-group (family)
4042.1.1.4 RNA_pol_Rpb2_45
Ligands and drugs
1,465
Member domains
128
with ligand contacts (≤ 4 Å)
8.7% of members
107
with DrugDomain annotations
7.3% of members
49
with a DrugBank compound
3.3% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4042.1.1.4 belongs to X-group 4042 barrel domain in beta subunit of DNA dependent RNA-polymerase, which has 16 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01045 | RFP | Rifampin | 13 |
| DB02431 | CTP | Cytidine-5'-Triphosphate | 10 |
| DB00171 | ATP | ATP | 5 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 4 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 4 |
| DB00615 | RBT | Rifabutin | 2 |
| DB01201 | RPT | Rifapentine | 2 |
| DB03170 | COD | Dephospho Coenzyme A | 2 |
| DB03532 | G2P | Phosphomethylphosphonic acid guanylate ester | 2 |
| DB04005 | UTP | Uridine 5'-triphosphate | 2 |
| DB04788 | TGT | Tagetitoxin | 2 |
| DB00131 | AMP | Adenosine phosphate | 1 |
| DB03258 | DCP | 2'-Deoxycytidine 5'-triphosphate | 1 |
| DB04022 | G4P | Guanosine tetraphosphate | 1 |
| DB14128 | NAD | Nadide | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| 1N7 | CHAPSO | 22 |
| RFP | RIFAMPICIN | 12 |
| 2TM | 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine | 10 |
| MGmetal | MAGNESIUM ION | 9 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 8 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 6 |
| 4QM | (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol | 4 |
| A1IF9 | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate | 4 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 4 |
| B4P | BIS(ADENOSINE)-5'-TETRAPHOSPHATE | 4 |
| KNG | Kanglemycin A | 3 |
| SRN | SORANGICIN A | 3 |
| 1RL | Benzoxazinorifamycin-2b | 2 |
| 1RM | Benzoxazinorifamycin-2c | 2 |
| 42S | N'-hydroxy-N-phenyl-3-(trifluoromethyl)benzenecarboximidamide | 2 |
| 42T | 3-{[(2,6-dichlorophenyl)carbamoyl]amino}-N-hydroxy-N'-phenyl-5-(trifluoromethyl)benzenecarboximidamide | 2 |
| 42U | 4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]-N-[2-(piperazin-1-yl)ethyl]-2-(trifluoromethyl)aniline | 2 |
| 4OB | N-hydroxy-N'-phenyl-3-(trifluoromethyl)benzenecarboximidamide | 2 |
| 4OD | N'-(3-bromophenyl)-4-fluoro-N-hydroxy-3-(trifluoromethyl)benzenecarboximidamide | 2 |
| 4OE | 5-(4-fluorophenyl)-4-[4-fluoro-3-(trifluoromethyl)phenyl]-1H-pyrazole | 2 |