F-group (family)
4043.1.1.1 RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Ligands and drugs
1,939
Member domains
521
with ligand contacts (≤ 4 Å)
26.9% of members
397
with DrugDomain annotations
20.5% of members
23
with a DrugBank compound
1.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4043.1.1.1 belongs to X-group 4043 C-terminal domain in beta subunit of DNA dependent RNA-polymerase, which binds 7.7 ligand superclasses per 20 proteins, broader than 51% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00171 | ATP | ATP | 4 |
| DB00142 | GLU | Glutamic acid | 3 |
| DB08874 | FI8 | Fidaxomicin | 3 |
| DB00128 | ASP | Aspartic acid | 2 |
| DB00156 | THR | Threonine | 2 |
| DB00160 | ALA | Alanine | 2 |
| DB03170 | COD | Dephospho Coenzyme A | 2 |
| DB08226 | MXP | Myxopyronin B | 2 |
| DB00131 | AMP | Adenosine phosphate | 1 |
| DB04137 | GTP | Guanosine-5'-Triphosphate | 1 |
| DB14128 | NAD | Nadide | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 473 |
| 1N7 | CHAPSO | 8 |
| ATP | ADENOSINE-5'-TRIPHOSPHATE | 5 |
| FI8 | Fidaxomicin | 4 |
| 4C2 | N-[3,4-dioxo-2-(4-{[4-(trifluoromethyl)benzyl]amino}piperidin-1-yl)cyclobut-1-en-1-yl]-3,5-dimethyl-1,2-oxazole-4-sulfonamide | 2 |
| 4C6 | 3,5-dimethyl-N-{2-[4-(4-methylbenzyl)piperidin-1-yl]-3,4-dioxocyclobut-1-en-1-yl}-1,2-oxazole-4-sulfonamide | 2 |
| A1IF9 | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate | 2 |
| B4P | BIS(ADENOSINE)-5'-TETRAPHOSPHATE | 2 |
| C0L | methyl[(1E,5R)-5-{(3E)-3-[(2E,4E,8R,9E,12E)-1,8-dihydroxy-2,5,9-trimethyltetradeca-2,4,9,12-tetraen-1-ylidene]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hex-1-en-1-yl]carbamate | 2 |
| COD | DEPHOSPHO COENZYME A | 2 |
| ECJ | (5R)-5-(6-amino-9H-purin-9-yl)-2-({[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}methyl)-4-oxo-4,5-dihydrofuran-3-yl trihydrogen diphosphate | 2 |
| MGmetal | MAGNESIUM ION | 2 |
| MXP | Myxopyronin B | 2 |
| 4C4 | Myxopyronin B | 1 |
| A1L89 | P1-(5'-Adenosyl) P4-(5'-uridyl) tetraphosphate | 1 |
| AMP | ADENOSINE MONOPHOSPHATE | 1 |
| NAD | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 1 |
| NE6 | methyl [(1E,5R)-5-{(3S)-3-[(2E,4E)-2,5-dimethylocta-2,4-dienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hexylidene]carbamate | 1 |
| QZY | 3-{[benzyl(ethyl)carbamoyl]amino}-5-(4-phenoxyphenyl)thiophene-2-carboxylic acid | 1 |