F-group (family)
4246.1.1.4 RNA_pol_Rpb1_2, RNA_pol_Rpb1_1
Ligands and drugs
75
Member domains
65
with ligand contacts (≤ 4 Å)
86.7% of members
0
with DrugDomain annotations
0.0% of members
0
with a DrugBank compound
0.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 4246.1.1.4 belongs to X-group 4246 N-terminal domain in RNA-polymerase beta-prime subunit, which binds 6.5 ligand superclasses per 20 proteins, narrower than 68% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
No DrugBank compounds are annotated on this group's domains.
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| ZNmetal | ZINC ION | 65 |
| C5P | CYTIDINE-5'-MONOPHOSPHATE | 6 |
| 2TM | 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine | 4 |
| A1IF9 | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl] hydrogen phosphate | 2 |
| B4P | BIS(ADENOSINE)-5'-TETRAPHOSPHATE | 2 |
| 1N7 | CHAPSO | 1 |
| A1L89 | P1-(5'-Adenosyl) P4-(5'-uridyl) tetraphosphate | 1 |
| A1L9G | P1-(5'-Adenosyl) P4-(5'-guanosyl) tetraphosphate | 1 |
| CTP | CYTIDINE-5'-TRIPHOSPHATE | 1 |
| G2P | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | 1 |
| G3A | GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE | 1 |
| GTP | GUANOSINE-5'-TRIPHOSPHATE | 1 |
| UTP | URIDINE 5'-TRIPHOSPHATE | 1 |